Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866633:139866664:[+] chr17:5286602:5286640:[+] nonBSJ supported 3UTR

circRNA 5': UCUCCAGGGCUUCCAGCAU------CUGCUCG-UCUUCC 3'


            ||||||| ||||| || ||| |||||


target  3':AAGAGGUCA-GAAGGAAAACAACACUGAAGAGAAAGAAGU 5'

 -24.90 2 RIC-seq
chrX:139865914:139865980:[+] chr17:5253844:5253910:[+] nonBSJ supported CDS

circRNA 5':CCAGGUCUUCCAGCCAAUAUAUGUCUUCCUGAAGAUC-CAC-GUCUUCCAGAAAAUCCAUGUCUUCCAG 3'


            ||| |||| ||:| |: |||||| ||| :|| |||| |||||||: ||


target  3':AGUCAAGAA-GUUGAACAGCCUCGACAAGACUUCAAUCGUGUUAG-AGGUAAGCGACGUACAGAGAGUA 5'

 -37.30 1 RIC-seq
chrX:139865918:139865980:[+] chr17:5253844:5253905:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAGCCAAUAUAUGUCUUCCUGAAGAUC-CAC-GUCUUCCAGAAAAUCCAUGUCUUCCAG 3'


            |||| ||:| |: |||||| ||| :|| |||| |||||||: ||


target  3': AGAA-GUUGAACAGCCUCGACAAGACUUCAAUCGUGUUAG-AGGUAAGCGACGUACAGAGAGUA 5'

 -32.50 1 RIC-seq
chrX:139866261:139866323:[+] chr17:5250107:5250165:[+] nonBSJ supported CDS

circRNA 5':UGUCUUC----CAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUCU-UCCCUCAAAUC--CAUAGCUUCCG 3'


            || ||| ||| |||: |::|||: ||| || ||| ||| | :|||||||


target  3':UCAUAAGUUUUGUC-GAUGUAUGUAGAGA-UCU---------AGUCAGGAUGUUCUAAAGAGUCGAAGGU 5'

 -27.20 1 RIC-seq
chrX:139866285:139866337:[+] chr17:5250132:5250176:[+] nonBSJ supported CDS

circRNA 5':CCAGAAAAUCCUUGUCUUCCC--UCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCU 3'


            |||| ||| ||||| |:|||| || ||:||


target  3':UGUCUAA-------AGACUCAUAAGUUU---UGUCGAUGUAUGUAGAGAUCUAGU 5'

 -15.70 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:5250107:5250165:[+] target - chr17:5250158-5250159 T>C LINC-JP ICGC
chr17:5250132:5250176:[+] target - chr17:5250158-5250159 T>C LINC-JP ICGC
chrX:139866261:139866323:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866285:139866337:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC