Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865574:139865612:[+] chr6:136599199:136599231:[-] nonBSJ supported CDS

circRNA 5':AAUCCAGAUCUUCCAGGAAAAUCCACGUCUUCCAGGAAA 3'


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target  3': UGGGUCUGGAAAGUCCUGAUA----C-GACUUACCUUA 5'

 -23.70 25 RIC-seq
chrX:139865577:139865612:[+] chr6:136599200:136599231:[-] nonBSJ supported CDS

circRNA 5': CCAGAUCUUCCAGGAAAAUCCACGUCUUCCAGGAAA 3'


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target  3':GGGUCUGGAAAGUCCUGAUA----C-GACUUACCUUA 5'

 -22.30 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr6:136599199:136599231:[-] target 1696857 chr6:136599206-136599207 C>A Pulmonary_artery_atresia ClinVar
chr6:136599200:136599231:[-] target 1696857 chr6:136599206-136599207 C>A Pulmonary_artery_atresia ClinVar