Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866041:139866067:[+] chr11:35253239:35253266:[+] nonBSJ supported 3UTR

circRNA 5':CCAAGU----CUUCCGGAUAAUUUGGGUCUU 3'


            ||||: |||||:|| ||: |:|:


target  3':AGUUCGACACGAAGGUCUC---AAUGCGGGA 5'

 -19.90 1 RIC-seq
chrX:139866041:139866073:[+] chr11:35253235:35253266:[+] nonBSJ supported 3UTR

circRNA 5':CCAAGU----CUUCCGGAUAAUUUGGGUCUUCCUGAA 3'


            ||||: |||||:|| ||: |:|:| |||


target  3':AGUUCGACACGAAGGUCUC---AAUGCGGGA--ACUC 5'

 -21.50 20 RIC-seq
chrX:139866045:139866073:[+] chr11:35253235:35253260:[+] nonBSJ supported 3UTR

circRNA 5': GU-CUUCCGGAUAAUUUGGGUCUUCCUGAA 3'


            || |||||:|| ||: |:|:| |||


target  3':ACACGAAGGUCUC---AAUGCGGGA--ACUC 5'

 -19.00 1 RIC-seq
chrX:139866062:139866086:[+] chr11:35253238:35253260:[+] nonBSJ supported 3UTR

circRNA 5':GGU-CUUCCUGAAAAUCUACGUCUUC 3'


            || ||||| || ||||:|:|


target  3':ACACGAAGGUCUCA---AUGCGGGAA 5'

 -16.30 1 RIC-seq
chrX:139865936:139865962:[+] chr11:35250722:35250757:[+] nonBSJ supported CDS

circRNA 5':GUCUUCC-UGAAGAUCCAC----------GUCUUCCAG 3'


            |||:| || || ||||| |||:||||


target  3':GAGAGGCAAC-UC-AGGUGAACCGAAAGACAGGAGGUG 5'

 -22.20 1 RIC-seq
chrX:139865936:139865962:[+] chr11:35250722:35250760:[+] nonBSJ supported CDS

circRNA 5': GUCUUCCUGAAGA-UCCAC----------GUCUUCCAG 3'


            |:||: |:| || ||||| |||:||||


target  3':CCGGAGAGGCAACUCAGGUGAACCGAAAGACAGGAGGUG 5'

 -25.30 11 RIC-seq
chrX:139865937:139865962:[+] chr11:35250722:35250759:[+] nonBSJ supported CDS

circRNA 5':UCUUC-CUGAAGA-UCCAC----------GUCUUCCAG 3'


            |:|| |:| || ||||| |||:||||


target  3':CGGAGAGGCAACUCAGGUGAACCGAAAGACAGGAGGUG 5'

 -23.40 1 RIC-seq
chrX:139866435:139866446:[+] chr11:35219666:35219677:[+] nonBSJ supported CDS

circRNA 5':AAGGUACGU-CUU 3'


            |:| |||| |:


target  3':CUUC-UGCAUGGA 5'

 -5.10 1 RIC-seq
chrX:139866635:139866678:[+] chr11:35198157:35198192:[+] nonBSJ supported CDS

circRNA 5':UCC-AGGGCUUCCAGCAUCUGCUCGUCUU--CCAACA-UCUCCACGUC 3'


            || ||:| |||| || ||| |||||||||


target  3': GGCUCUCU----------ACGA-CAUCGCUGGUAAAAAGAGGUGCAC 5'

 -21.90 9 RIC-seq
chrX:139866682:139866697:[+] chr11:35201929:35201943:[+] nonBSJ supported CDS

circRNA 5':CAGCAUCUCUGUGUCU 3'


            |||| ||||||


target  3':UUCGUUAU-ACACAGU 5'

 -12.30 15 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr11:35198157:35198192:[+] target - chr11:35198181-35198182 A>G LINC-JP ICGC