Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865839:139865872:[+] chr10:17271837:17271868:[+] nonBSJ supported CDS

circRNA 5':CAGUGUCUUCCAGAAAAAUCUACGUCUUCCACCA 3'


            || |||::|||| || |:||| ||


target  3':CUC-CAGGGGGUCCGCGCUGAA-CGGAACCGGGA 5'

 -20.90 15 RIC-seq
chrX:139865848:139865870:[+] chr10:17271791:17271819:[+] nonBSJ supported CDS

circRNA 5': CCAGAAAAAUCUACGUCU-----UCCAC 3'


            |||| |||| ||| ||||


target  3':CGGUCGUCCUAGAAUAAGACGACGAGGUC 5'

 -12.10 1 RIC-seq
chrX:139866332:139866376:[+] chr10:17271871:17271908:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGGAAAUCC-GUGU--CUUCCAGCAAAUCCACGUCUUCC 3'


            ||||: || | || |:|: ||:|| ||| ||| ||:||


target  3': CCAGGUGGA-C----GGCCGCGUCGAGGG-CGUAGAGG---AGGAGC 5'

 -30.40 11 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr10:17271871:17271908:[+] target 12199 chr10:17271872-17271873 G>A Cataract_30|not_provided ClinVar