Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865989:139866035:[+] chr13:42860434:42860493:[+] nonBSJ supported 5UTR

circRNA 5':UGUCUUCCAGUAACCUCCC------------AGUCUUCC-AGAA--AAUCCACGUCUUCCCA 3'


            ||| ||| |||| |:|| ||| |||||||: ||


target  3':UCAGC-GGU-AUUGAUAAAAAACAACAUAUAUUAGUUACUUCUCAAUUAGGUGUUUUGUGGA 5'

 -17.10 1 RIC-seq
chrX:139865765:139865810:[+] chr13:42876362:42876401:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAGAAAGAAAUC-CAGGUCUUCCAGUCAAUCAGUGUCUUCC 3'


            |||| |||||||| ||| || ||||: :|| :||


target  3':AAGAA-GUCUUUCUCUAGCGUACUCAA----AGUUG--UACUUGAGA 5'

 -20.40 2 RIC-seq
chrX:139866068:139866083:[+] chr13:42860484:42860499:[+] nonBSJ supported CDS

circRNA 5':CCUGAAAAUCUACGUC 3'


            |||||| || |:|


target  3':AGACUUUCAGCGGUAU 5'

 -9.10 1 RIC-seq
chrX:139866315:139866356:[+] chr13:42877704:42877737:[+] nonBSJ supported CDS

circRNA 5':UAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUU 3'


            |||| | ||: ||: ||:|| |||||


target  3':UUCGACCGAAUGAUGA--CCGC----UCUCUUGGG-ACAGA 5'

 -13.80 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866315:139866356:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC