5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139865345:139865383:[+] | chr13:42877360:42877390:[+] | nonBSJ supported | CDS |
circRNA 5':CCGAUGGCACCUGUGUCAAGGUCUUCCAACAACUCCGGG 3' || ||:||| ||| :||||| || |||:| target 3':UGC-ACUGUG-----AGUAAUAGAAGAA-GUAUAGGUC 5' |
-21.60 | 1 | RIC-seq |
| chrX:139865352:139865399:[+] | chr13:42877397:42877441:[+] | nonBSJ supported | CDS |
circRNA 5':CACCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUCA 3' ||||||| || |:| ||| ||:| ||| target 3':UUGGACACUAAAACACUCCUUCCGACUU-CUCUGAAUC-CGUU-AAGA 5' |
-18.30 | 1 | RIC-seq |
| chrX:139865352:139865407:[+] | chr13:42877370:42877441:[+] | nonBSJ supported | CDS |
circRNA 5':CACCUGUGUC---------AAGGU--------CUUCCAACAACUCCGGGUCUUCCAGCGAC-UUCAA-GUCUUCC 3' ||||||| ||||: ||| ||| || ||| | ||| :||| :||||| target 3':UUGGACACUAAAACACUCCUUCCGACUUCUCUGAAUCC-GUUAAGA-CCACAUUG-CACUGUGAGUAAUAGAAGA 5' |
-27.20 | 11 | RIC-seq |
| chrX:139865352:139865418:[+] | chr13:42877378:42877441:[+] | nonBSJ supported | CDS |
circRNA 5':CACCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUCAAGUCUUCCAAUAAUCUCAA 3' ||||||| || |:| ||| ||:| ||| || |||| target 3':UUGGACACUAAAACACUCCUUCCGACUU-CUCUGAAUC-CGUU-AAGACCACAUUGCACUGUGAGUA 5' |
-21.30 | 2 | RIC-seq |
| chrX:139865352:139865423:[+] | chr13:42877374:42877441:[+] | nonBSJ supported | CDS |
circRNA 5':CACCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUCAAGUCUUCCAAUAAUCUCAAGGUCU 3' ||||||| || |:| ||| ||:| ||| || |||| :|| target 3':UUGGACACUAAAACACUCCUUCCGACUU-CUCUGAAUC-CGUU-AAGACCACAUUGCACUGUGAGUAAUAG 5' |
-22.90 | 12 | RIC-seq |
| chrX:139865671:139865693:[+] | chr13:42875120:42875145:[+] | nonBSJ supported | CDS |
circRNA 5':AUGUCUUCCAGAAAAAUC----UGUGU 3' |||| ||| |||| target 3':AACAGU-GGUAUUAACGAACUAACACU 5' |
-7.80 | 1 | RIC-seq |
| chrX:139865671:139865695:[+] | chr13:42875089:42875145:[+] | nonBSJ supported | CDS |
circRNA 5':AUGUCUUCCA--------------------------GAAAAA-------UCUGUGUCU 3' |||| ||| ||||| :||||||| target 3':AACAGU-GGUAUUAACGAACUAACACUUUUCUUCCCCUUUUGCACUGUCGGACACAGC 5' |
-14.70 | 24 | RIC-seq |
| chrX:139865687:139865703:[+] | chr13:42875136:42875151:[+] | nonBSJ supported | CDS |
circRNA 5':UCUGUGUCUUC-CACCAA 3' ||| || ||||| target 3': GAC-CAAAACAGUGGUA 5' |
-8.20 | 23 | RIC-seq |
| chrX:139866436:139866447:[+] | chr13:42877034:42877044:[+] | nonBSJ supported | CDS |
circRNA 5':AGGUACGUCUUC 3' ||| ||||| target 3':ACCAA-CAGAAU 5' |
-7.50 | 1 | RIC-seq |
| chrX:139866454:139866465:[+] | chr13:42877034:42877044:[+] | nonBSJ supported | CDS |
circRNA 5':AGGUACGUCUUC 3' ||| ||||| target 3':ACCAA-CAGAAU 5' |
-7.50 | 1 | RIC-seq |
| chrX:139866455:139866481:[+] | chr13:42877035:42877056:[+] | nonBSJ supported | CDS |
circRNA 5':GGUAC-GUCUUCCAACAAAGGUAUGUCU 3' |:|| |: || ||| ||||| target 3':ACGUGACG------UGAAACCA-ACAGAA 5' |
-10.10 | 1 | RIC-seq |
| chrX:139866455:139866483:[+] | chr13:42877034:42877056:[+] | nonBSJ supported | CDS |
circRNA 5':GGUAC-GUCUUCCAACAAAGGUAUGUCUUC 3' |:|| |: || ||| |||||| target 3':ACGUGACG------UGAAACCA-ACAGAAU 5' |
-11.20 | 41 | RIC-seq |