Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866331:139866341:[+] chr8:53569932:53569942:[-] nonBSJ supported CDS

circRNA 5':CAGGUCUUCCA 3'


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target  3':UUCCAGAAGGA 5'

 -16.20 22 RIC-seq
chrX:139866506:139866535:[+] chr8:53554941:53554971:[-] nonBSJ supported CDS

circRNA 5':AAAUCCACGUCUUCCAACCAA-GCCAUGUCU 3'


            ||||||| |||||| || ||:


target  3':CUUAGGUG-AGAAGGAAGUAGACGACAAAGGU 5'

 -19.50 1 RIC-seq
chrX:139866506:139866538:[+] chr8:53554941:53554971:[-] nonBSJ supported CDS

circRNA 5':AAAUCCACGUCUUCCAACCAA-GCCAUGUCUUCC 3'


            ||||||| |||||| || ||| ||||


target  3':CUUAGGUG-AGAAGGAAGUAGACG--ACA-AAGGU 5'

 -22.20 1 RIC-seq
chrX:139866506:139866547:[+] chr8:53554941:53554981:[-] nonBSJ supported CDS

circRNA 5':AAAUCCACGUCUUCCAACCAA-GCCAUGUCUUC-CAGAAAAUCC 3'


            ||||||| |||||| || ||| |:| ||| |||


target  3':CUUAGGUG-AGAAGGAAGUAGACG--ACAAAGGUGUCGCCUAGA 5'

 -25.70 28 RIC-seq