Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866117:139866180:[+] chr11:73372815:73372876:[+] nonBSJ supported 3UTR

circRNA 5':AUCUUCCAAUGGCCUCCAGGUCUUCCAGACUAUCCAUGUCUUCCAGAAAAUCCUUG-UCUUCCCU 3'


            ||| |:| |:| |||| || ||| || |||||||


target  3':CAGAUCACCAUCUACACUUCUGAAGUUCGCUACAA-ACAU--GGACACUACUAUCGAAGAAGGGU 5'

 -19.50 35 RIC-seq
chrX:139866125:139866180:[+] chr11:73372815:73372871:[+] nonBSJ supported 3UTR

circRNA 5':AUGGCCUCC---AGGUCUUCCAGACUAUCCAUGUCUUCCAGAAAAUCCUUG-UCUUCCCU 3'


            ||| |:| |||| || ||| || |||||||


target  3':CACCAUCUACACUUCUGAAGUUCGCUACAA-ACAU--GGACACUACUAUCGAAGAAGGGU 5'

 -18.50 1 RIC-seq
chrX:139866404:139866449:[+] chr11:73373093:73373137:[+] nonBSJ supported 3UTR

circRNA 5':AUG-UCUUCCAGCCUACUUGUGU--CUUCCAACAAAGGUACGUCUUCCA 3'


            || |||||||||||||:||| | ||:|| | :|| | |||


target  3':GACAAGAAGGUCGGAUGGACAGAACGAGGGACGGG---GUGGAC-AGGA 5'

 -41.10 1 RIC-seq
chrX:139866404:139866457:[+] chr11:73373083:73373137:[+] nonBSJ supported 3UTR

circRNA 5':AUG-UCUUCCAGCCUACUUGUGU--CUUCCAACAAAGGUAC--GUCUUCCAACAAAGGU 3'


            || |||||||||||||:||| | ||:|| | :|| |||:| ||||||


target  3':GACAAGAAGGUCGGAUGGACAGAACGAGGGACGGG---GUGGACAGGAACA-GUUUCCU 5'

 -47.30 2 RIC-seq
chrX:139866404:139866460:[+] chr11:73373082:73373137:[+] nonBSJ supported 3UTR

circRNA 5':AUG-UCUUCCAGCCUACUUGUGU--CUUCCAACAAAGGUAC--GUCUUCCAACAAAGGUACG 3'


            || |||||||||||||:||| | ||:|| | :|| |||:| |||||| ||


target  3':GACAAGAAGGUCGGAUGGACAGAACGAGGGACGGG---GUGGACAGGAACA-GUUUCC-UG 5'

 -49.10 21 RIC-seq