Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865765:139865793:[+] chr1:36028205:36028225:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAGAAAGAAAUCCAGGUCU-UCCA 3'


            |||:| | |||||| :||


target  3': AGAGGACC--------GGUCCACCCGGGA 5'

 -12.40 1 RIC-seq
chrX:139866170:139866226:[+] chr1:36032309:36032353:[+] nonBSJ supported Intron

circRNA 5':UUGUCUUCCCUUAAAUCUAUAGCUUCCAAAAAAUCCGGGUCUUC-CAGGAAAUCCGUG 3'


            ||||: :|:||||| || | ||: || |||:| ||:


target  3':CACAGGUGUACAC----GUGUCGAAACUU-----GAACCGCUAGUGUCUU----GCGU 5'

 -18.50 17 RIC-seq
chrX:139866170:139866230:[+] chr1:36032306:36032353:[+] nonBSJ supported Intron

circRNA 5':UUGUCUUCCCUUAAAUCUAUAGCUUCCAAAAAAUCCGGGUCUUC-CAGGAAAUCCGUGUCUU 3'


            ||||: :|:||||| || | ||: || |||:| ||:: ||


target  3':CACAGGUGUACAC----GUGUCGAAACUU-----GAACCGCUAGUGUCUU----GCGU-GAC 5'

 -18.80 16 RIC-seq
chrX:139866223:139866249:[+] chr1:36032332:36032354:[+] nonBSJ supported Intron

circRNA 5':CGUGUCUUCCAGCAAGUCCACGUCUUC 3'


            |||||: :|| || |||: |||


target  3':UCACAGG----UGUACACGUGUCGAAA 5'

 -15.80 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:36032306:36032353:[+] target - chr1:36032334-36032335 A>T LINC-JP ICGC
chr1:36032309:36032353:[+] target - chr1:36032334-36032335 A>T LINC-JP ICGC
chr1:36032332:36032354:[+] target - chr1:36032334-36032335 A>T LINC-JP ICGC