Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865560:139865588:[+] chr12:41408055:41408079:[+] nonBSJ supported CDS

circRNA 5': CUGG-UCUUCCACCAAAUCCAGAUCUUCCA 3'


            ||| ||||||||| |||| |:|||


target  3':AGACAAAGAAGGUGG---AGGU---GGAGGA 5'

 -28.30 2 RIC-seq
chrX:139865611:139865647:[+] chr12:41330684:41330703:[+] nonBSJ supported CDS

circRNA 5':AAUCCAUGUCUUCCAAUAAUUUCAAGGUCUUCCAUCA 3'


            |||||| || |||||


target  3':AUAGGUAAAA-----------------AGUUGGUAGC 5'

 -13.80 1 RIC-seq
chrX:139865659:139865680:[+] chr12:41330688:41330708:[+] nonBSJ supported CDS

circRNA 5':UCCAGCUAAUCCAUG--UCUUCCA 3'


            || || |||||| || ||


target  3': GG-CGUAUAGGUAAAAAGUUGG 5'

 -13.80 1 RIC-seq
chrX:139865659:139865681:[+] chr12:41330686:41330708:[+] nonBSJ supported CDS

circRNA 5':UCCAGCUAAUCCAUG--UCUUCCAG 3'


            || || |||||| || |||


target  3': GG-CGUAUAGGUAAAAAGUUGGUA 5'

 -14.50 27 RIC-seq
chrX:139865659:139865681:[+] chr12:41330687:41330708:[+] nonBSJ supported CDS

circRNA 5':UCCAGCUAAUCCAUG--UCUUCCAG 3'


            || || |||||| || |||


target  3': GG-CGUAUAGGUAAAAAGUUGGU 5'

 -14.50 1 RIC-seq
chrX:139865699:139865718:[+] chr12:41330686:41330708:[+] nonBSJ supported CDS

circRNA 5':AC-CAAAUCCAAG--UCUUCCAG 3'


            | || ||||| || |||


target  3':GGCGUAUAGGUAAAAAGUUGGUA 5'

 -11.00 1 RIC-seq
chrX:139865705:139865732:[+] chr12:41408055:41408080:[+] nonBSJ supported CDS

circRNA 5': UCCAAGUCUUCCAGUAAAUCUAGUUCUU 3'


            || ||||||| ||:| :||:


target  3':GAGACAAAGAAGGUGG---AGGUGGAGGA 5'

 -17.80 2 RIC-seq
chrX:139865947:139865970:[+] chr12:41316059:41316087:[+] nonBSJ supported CDS

circRNA 5': GAUCCACGUCUUCCAGAAAA-----UCCA 3'


            |||| ||||| :||| ||||


target  3':UCUAGUUGCAG-GGGUAAUAAGUAAGAGGU 5'

 -18.20 1 RIC-seq
chrX:139865947:139865971:[+] chr12:41316059:41316087:[+] nonBSJ supported CDS

circRNA 5': GAUCCACGUCUUCCAGAAAA-----UCCAU 3'


            |||| ||||| :||| ||||


target  3':UCUAGUUGCAG-GGGUAAUAAGUAAGAGGU 5'

 -18.80 1 RIC-seq
chrX:139866059:139866106:[+] chr12:41330619:41330673:[+] nonBSJ supported CDS

circRNA 5':UUGGGUCUUCCUGAAAAUCUACGUCUU-CCAAAAAA-------GCC-AUGUCUUCCA 3'


            ||||: |||||| |:||: ||| ||| |||||: ||


target  3':UACCCGAAAGGACACC--GGUGUGUUCCGGUCAUCUCUAGUGACGGAUACAGGUGGA 5'

 -33.40 11 RIC-seq
chrX:139866104:139866146:[+] chr12:41422868:41422904:[+] nonBSJ supported CDS

circRNA 5':CCAGAAAAUCCACAUCUUCCAAUGGCCUCCAGGUCUUCCAGAC 3'


            ||| |||| ||||| ||||||| |||


target  3':UGUCGAACG---GUAGUACG--ACCGGUAGUCCAGACA-UCUC 5'

 -27.80 26 RIC-seq
chrX:139866125:139866146:[+] chr12:41422868:41422888:[+] nonBSJ supported CDS

circRNA 5':AUGGCCUCCAGGUCUUCCAGAC 3'


            ||||| ||||||| |||


target  3':GACCGGUAGUCCAGACA-UCUC 5'

 -22.90 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr12:41330619:41330673:[+] target 655024 chr12:41330668-41330669 GC>G Compton-North_congenital_myopathy ClinVar
chr12:41422868:41422888:[+] target - chr12:41422888-41422889 G>C COCA-CN ICGC
chr12:41422868:41422904:[+] target - chr12:41422888-41422889 G>C COCA-CN ICGC