Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866242:139866268:[+] chr10:298408:298440:[+] nonBSJ supported 3UTR

circRNA 5':ACGUC-------UUCCAACAAA-GCCAUGUCUUCC 3'


            |:|| :||| |||| | ||||


target  3':AGUAGCCCCACUGAGGCCCUUCCCGGU-C-GAAGU 5'

 -12.90 2 RIC-seq
chrX:139866242:139866269:[+] chr10:298399:298440:[+] nonBSJ supported 3UTR

circRNA 5':ACGUC-------UUCCAACAAA-GCCA----UGUCU--UCCA 3'


            |:|| :||| |||| ::||| |||


target  3':AGUAGCCCCACUGAGGCCCUUCCCGGUCGAAGUAGAAAAGGC 5'

 -13.20 10 RIC-seq
chrX:139866368:139866394:[+] chr10:298408:298440:[+] nonBSJ supported 3UTR

circRNA 5':ACGUC-------UUCCAACAAA-GCCAUGUCUUCC 3'


            |:|| :||| |||| | ||||


target  3':AGUAGCCCCACUGAGGCCCUUCCCGGU-C-GAAGU 5'

 -12.90 1 RIC-seq
chrX:139866368:139866395:[+] chr10:298399:298440:[+] nonBSJ supported 3UTR

circRNA 5':ACGUC-------UUCCAACAAA-GCCA----UGUCU--UCCA 3'


            |:|| :||| |||| ::||| |||


target  3':AGUAGCCCCACUGAGGCCCUUCCCGGUCGAAGUAGAAAAGGC 5'

 -13.20 12 RIC-seq
chrX:139866370:139866392:[+] chr10:298451:298478:[+] nonBSJ supported 3UTR

circRNA 5':GUCUUCC-AAC-AAAGCCA---UGUCUU 3'


            |||| ||| |||:|| |||||


target  3':AAGAACCUUUGUUUUUGGCGACACAGAC 5'

 -11.60 1 RIC-seq
chrX:139866586:139866608:[+] chr10:298451:298478:[+] nonBSJ supported 3UTR

circRNA 5':GUCUUCC-AACAAAU-CCA---UGUCUU 3'


            |||| |||||| || |||||


target  3':AAGAACCUUUGUUUUUGGCGACACAGAC 5'

 -10.10 3 RIC-seq
chrX:139865811:139865829:[+] chr10:292704:292722:[+] nonBSJ supported CDS

circRNA 5': AGAAAGAAAUCCAGGUCUU 3'


            |||| | ||||||||:|:


target  3':GUCUUCC-UUAGGUCCGGGA 5'

 -20.40 7 RIC-seq
chrX:139866127:139866146:[+] chr10:288059:288081:[+] nonBSJ supported CDS

circRNA 5':GGCCUCCA--GGUCUU--CCAGAC 3'


            ||||| ||| |||:|


target  3': UGGAGACCACCACCACCGGUUUC 5'

 -11.70 1 RIC-seq
chrX:139866158:139866164:[+] chr10:288059:288065:[+] nonBSJ supported CDS

circRNA 5':UCCAGAA 3'


            |||:|


target  3':CGGUUUC 5'

 -4.20 7 RIC-seq
chrX:139866632:139866646:[+] chr10:294533:294547:[+] nonBSJ supported CDS

circRNA 5':AUCUCCAGGGCUUCC 3'


            |||||||:|||||


target  3':AAGAGGUCUCGAAGA 5'

 -24.00 5 RIC-seq
chrX:139866659:139866717:[+] chr10:293350:293408:[+] nonBSJ supported CDS

circRNA 5':UCUUCCAACAU---CUCCACGUCUUCCA--GCAUC-UCUGUGUCUUCCAGCAUCUUCAUGUCUUC 3'


            ||||| ||||||: ||| :| || ||: |||| || |||| ||||


target  3':UGAAGGAAAAACCCGAGGUGU-GAAACUAAUGCAGCAGGAA-AGAAA--CG-AGAACCA-AGAAC 5'

 -26.30 29 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr10:298399:298440:[+] target 208648 chr10:298399-298400 C>T Inborn_genetic_diseases|Global_developmental_delay|not_provided|Neurodevelopmental_disorder|Intellectual_disability,_autosomal_dominant_30|ZMYND11-related_disorder ClinVar
chr10:293350:293408:[+] target - chr10:293403-293404 G>A BTCA-JP ICGC
chrX:139866586:139866608:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC