Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866322:139866353:[+] chr19:15533392:15533434:[-] nonBSJ supported 3UTR

circRNA 5': CGAAAAAUCCA---------GGUCUUC--CAGGAAAUCCGUGU 3'


            || ||:||| ||||: |||| :||| ||


target  3':AGCAAGUUGGGUCCUUGACCCCCAGGCCCCGUCCA--GGGCCCAG 5'

 -20.90 1 RIC-seq
chrX:139866322:139866354:[+] chr19:15533392:15533435:[-] nonBSJ supported 3UTR

circRNA 5': CGAAAAAUCCA---------GGUCUUC--CAGGAAAUCCGUGUC 3'


            || ||:||| ||||: |||| :||| |||


target  3':AGCAAGUUGGGUCCUUGACCCCCAGGCCCCGUCCA--GGGCCCAGA 5'

 -23.60 2 RIC-seq
chrX:139866322:139866355:[+] chr19:15533392:15533436:[-] nonBSJ supported 3UTR

circRNA 5': CGAAAAAUCCA---------GGUCUUC--CAGGAAAUCCGUGUCU 3'


            || ||:||| ||||: |||| :||| ||||


target  3':AGCAAGUUGGGUCCUUGACCCCCAGGCCCCGUCCA--GGGCCCAGAG 5'

 -25.40 28 RIC-seq
chrX:139866327:139866355:[+] chr19:15533397:15533436:[-] nonBSJ supported 3UTR

circRNA 5': AAUCCA---------GGUCUUC--CAGGAAAUCCGUGUCU 3'


            ||:||| ||||: |||| :||| ||||


target  3':GUUGGGUCCUUGACCCCCAGGCCCCGUCCA--GGGCCCAGAG 5'

 -23.80 1 RIC-seq
chrX:139866332:139866346:[+] chr19:15533389:15533408:[-] nonBSJ supported 3UTR

circRNA 5':AGGUCU-----UCCAGGAAA 3'


            |||| :|||||||


target  3':ACCAGCAAGUUGGGUCCUUG 5'

 -15.40 1 RIC-seq