Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865716:139865754:[+] chr6:143091354:143091382:[-] nonBSJ supported CDS

circRNA 5':CAGUAAAUCUAGUUCUUCCAGAAAAAUCUAGAUCUUCCA 3'


            ||: |||| |||| || | |||


target  3': UCGG-UAGAAAACCGA-GUCU-------UCGUGUAGGA 5'

 -9.50 1 RIC-seq
chrX:139865753:139865788:[+] chr6:143091354:143091385:[-] nonBSJ supported CDS

circRNA 5':CAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUC 3'


            ||:|| || || ||||| |||| ||


target  3': UCGGUAGAAAACCGA--GUCUUCGUGUAGGAACA 5'

 -14.40 1 RIC-seq
chrX:139865753:139865789:[+] chr6:143091354:143091386:[-] nonBSJ supported CDS

circRNA 5':CAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCU 3'


            ||:|| || || ||||| |||| |||


target  3': UCGGUAGAAAACCGA--GUCUUCGUGUAGGAACAG 5'

 -18.40 11 RIC-seq
chrX:139865792:139865815:[+] chr6:143091354:143091374:[-] nonBSJ supported CDS

circRNA 5':CAGUCAAUCAGUGUCUUCCAGAAA 3'


            ||:|| || || |||||


target  3': UCGGUAGAAAACCGA--GUCUUC 5'

 -9.20 1 RIC-seq
chrX:139865792:139865823:[+] chr6:143091354:143091381:[-] nonBSJ supported CDS

circRNA 5':CAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCA 3'


            ||:|| || || ||||| ||||


target  3': UCGGUAGAAAACCGA--GUCUUCGUGUAGG 5'

 -14.50 1 RIC-seq
chrX:139865792:139865823:[+] chr6:143091354:143091382:[-] nonBSJ supported CDS

circRNA 5':CAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCA 3'


            ||:|| || || ||||| ||||


target  3': UCGGUAGAAAACCGA--GUCUUCGUGUAGGA 5'

 -14.30 1 RIC-seq
chrX:139865792:139865827:[+] chr6:143091354:143091385:[-] nonBSJ supported CDS

circRNA 5':CAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUC 3'


            ||:|| || || ||||| |||| ||


target  3': UCGGUAGAAAACCGA--GUCUUCGUGUAGGAACA 5'

 -14.40 13 RIC-seq
chrX:139866674:139866710:[+] chr6:143080995:143081031:[-] nonBSJ supported CDS

circRNA 5':ACG-UCUUCCAGCAUCUC-UGUGUCUUCCAGCAUCUUCA 3'


            || |||| || |||:||||| |||||


target  3':CGCGAGAAUAACACC-AGUACAUAGAAGAGAG-AGAAGA 5'

 -20.10 18 RIC-seq