Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865379:139865446:[+] chr1:41608671:41608742:[-] nonBSJ supported CDS

circRNA 5':CCGGGU-CU------UCCAGCGACUUCAAGUCUUCCAAUAAUCUCAA----GGUCUUCCAGAUAAUCCUGAGCUUCCAG 3'


            ||||: |: ||||:| ||| || ||||| ||| |||| ||||| |||||||


target  3':CGCCCGUGGACAGUCAGGUUGAUGA----CACC--GUUAUGUCCACCUACACCACAAGGACCCC-AGGACACGAAGGUU 5'

 -40.70 2 RIC-seq
chrX:139865390:139865446:[+] chr1:41608670:41608742:[-] nonBSJ supported CDS

circRNA 5':AGCGACUUCAAGUCU-UCCAAUAAUCU----CAA-------------GGUCUUCCAGAUAAUCCUGAGCUUCCAG 3'


            ||| | ||| |||||: || ||| ||| |||| ||||| |||||||


target  3':CCGCCCGUGGACAGUCAGGUUGAU-GACACCGUUAUGUCCACCUACACCACAAGGACCCC-AGGACACGAAGGUU 5'

 -35.60 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:41608670:41608742:[-] target - chr1:41608726-41608727 G>T LINC-JP ICGC
chr1:41608671:41608742:[-] target - chr1:41608726-41608727 G>T LINC-JP ICGC