Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865662:139865694:[+] chrX:148561907:148561932:[-] nonBSJ supported 3UTR

circRNA 5':AGCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUC 3'


            ||| |:|||||| || ||| |||


target  3':ACGAGU-------GGAGGUCUAUUCAGAAACAC 5'

 -17.10 19 RIC-seq
chrX:139865662:139865694:[+] chrX:148561908:148561932:[-] nonBSJ supported 3UTR

circRNA 5':AGCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUC 3'


            ||| |:|||||| || ||| |||


target  3': CGAGU-------GGAGGUCUAUUCAGAAACAC 5'

 -15.80 3 RIC-seq
chrX:139865707:139865723:[+] chrX:148561921:148561939:[-] nonBSJ supported 3UTR

circRNA 5':CAAGUCUUCCA---GUAAAU 3'


            ||||||| |:|||


target  3':AUUCAGAAACACCCCGUUU 5'

 -7.30 1 RIC-seq
chrX:139866215:139866247:[+] chrX:148568500:148568538:[-] nonBSJ supported CDS

circRNA 5':AGGAAA----UC-CGUGU-CUUCCAGCAAGUCCA--CGUCU 3'


            ||||| || ||: | |:||| | |||| ||||


target  3':CCCUUUUCGAAGAGCGGACGGAGGCC-UUCACUUCGGCAG 5'

 -22.60 1 RIC-seq
chrX:139866215:139866251:[+] chrX:148568500:148568539:[-] nonBSJ supported CDS

circRNA 5':AGGAAA----UC-CGUGU-CUUCCAGCAAGUCCACGUCUUCCA 3'


            ||||| || ||: | |:||| | |||| |:| |||


target  3':CCCUUUUCGAAGAGCGGACGGAGGCC-UUCACUU-CGGCAGG 5'

 -24.40 10 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:148568500:148568538:[-] target 221975 chrX:148568502-148568503 GAA>G Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148568500:148568538:[-] target 988691 chrX:148568506-148568507 AG>A Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148568500:148568538:[-] target 1455709 chrX:148568513-148568514 C>A Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148568500:148568538:[-] target 3255966 chrX:148568513-148568514 CGCCTGCCTCCGGAAGTGAA>C Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148568500:148568538:[-] target 10491 chrX:148568514-148568515 G>A Mucopolysaccharidosis,_MPS-II|not_provided ClinVar
chrX:148568500:148568538:[-] target 1068822 chrX:148568520-148568521 CT>C Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148568500:148568538:[-] target 3255965 chrX:148568520-148568521 CTCCGGAAGTGAAGCCGTCCT>C Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148568500:148568538:[-] target 3255968 chrX:148568523-148568524 CG>C Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148568500:148568538:[-] target 3255967 chrX:148568530-148568531 G>C Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148568500:148568538:[-] target 569306 chrX:148568530-148568531 G>T Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148568500:148568538:[-] target 437444 chrX:148568537-148568538 T>A Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148568500:148568539:[-] target 221975 chrX:148568502-148568503 GAA>G Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148568500:148568539:[-] target 988691 chrX:148568506-148568507 AG>A Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148568500:148568539:[-] target 1455709 chrX:148568513-148568514 C>A Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148568500:148568539:[-] target 3255966 chrX:148568513-148568514 CGCCTGCCTCCGGAAGTGAA>C Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148568500:148568539:[-] target 10491 chrX:148568514-148568515 G>A Mucopolysaccharidosis,_MPS-II|not_provided ClinVar
chrX:148568500:148568539:[-] target 1068822 chrX:148568520-148568521 CT>C Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148568500:148568539:[-] target 3255965 chrX:148568520-148568521 CTCCGGAAGTGAAGCCGTCCT>C Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148568500:148568539:[-] target 3255968 chrX:148568523-148568524 CG>C Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148568500:148568539:[-] target 3255967 chrX:148568530-148568531 G>C Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148568500:148568539:[-] target 569306 chrX:148568530-148568531 G>T Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148568500:148568539:[-] target 437444 chrX:148568537-148568538 T>A Mucopolysaccharidosis,_MPS-II ClinVar