Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866247:139866286:[+] chrX:148579673:148579711:[-] nonBSJ supported CDS

circRNA 5':UUCCAACAAAGCCAUGUCUUCCAGACUAUCC-AUGUCUUCC 3'


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target  3':UGGGUUGC--CGGUCCUUCUUUCCUGACCGACUGCAAAAGU 5'

 -18.50 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:148579673:148579711:[-] target 3255794 chrX:148579673-148579674 A>C Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148579673:148579711:[-] target 1724443 chrX:148579673-148579674 ACC>A Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148579673:148579711:[-] target 2737388 chrX:148579675-148579676 C>G Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148579673:148579711:[-] target 3255793 chrX:148579675-148579676 C>T Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148579673:148579711:[-] target 3255792 chrX:148579676-148579677 C>G Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148579673:148579711:[-] target 3255791 chrX:148579678-148579679 A>T Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148579673:148579711:[-] target 3255789 chrX:148579684-148579685 A>G Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148579673:148579711:[-] target 949135 chrX:148579691-148579692 AAG>A Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148579673:148579711:[-] target 3255788 chrX:148579692-148579693 A>AG Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148579673:148579711:[-] target 3255787 chrX:148579700-148579701 CT>C Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148579673:148579711:[-] target 92622 chrX:148579705-148579706 G>A Inborn_genetic_diseases|Mucopolysaccharidosis,_MPS-II|not_provided|not_specified ClinVar
chrX:148579673:148579711:[-] target 3255786 chrX:148579705-148579706 G>C Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148579673:148579711:[-] target 3255785 chrX:148579705-148579706 GT>G Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148579673:148579711:[-] target 3255784 chrX:148579709-148579710 T>A Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148579673:148579711:[-] target 1725453 chrX:148579709-148579710 TC>T Mucopolysaccharidosis,_MPS-II ClinVar
chrX:148579673:148579711:[-] target - chrX:148579685-148579686 G>A LINC-JP ICGC