Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866604:139866646:[+] chr3:52510477:52510514:[+] nonBSJ supported CDS

circRNA 5': GUCUUCCUAUAUCUCCAGGUCUUCCAG-CAUC----UCCAGGGCUUCC 3'


            |:|||| ||| ||:||| |||| || :||||||


target  3':ACGGAAG----------UCC-GAGGGUGAGUAGUUUAAGACUCCGAAGU 5'

 -32.00 21 RIC-seq
chrX:139866614:139866646:[+] chr3:52510477:52510513:[+] nonBSJ supported CDS

circRNA 5':AUCUCCAGGUCUUCCAG-CAUC----UCCAGGGCUUCC 3'


            ||| |||| ||:||| |||| || :||||||


target  3':CGGAAGUCC-GAGGGUGAGUAGUUUAAGACUCCGAAGU 5'

 -30.90 2 RIC-seq
chrX:139866622:139866646:[+] chr3:52510477:52510514:[+] nonBSJ supported CDS

circRNA 5': GUCUUCCAGCAUCUCCA--------------GGGCUUCC 3'


            |:|||| || || ||| :||||||


target  3':ACGGAAGUCCG-AG-GGUGAGUAGUUUAAGACUCCGAAGU 5'

 -23.50 23 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr3:52510477:52510513:[+] target - chr3:52510498-52510499 G>A PACA-CA ICGC
chr3:52510477:52510513:[+] target - chr3:52510498-52510499 G>T LICA-CN ICGC
chr3:52510477:52510514:[+] target - chr3:52510498-52510499 G>A PACA-CA ICGC
chr3:52510477:52510514:[+] target - chr3:52510498-52510499 G>T LICA-CN ICGC