Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866214:139866254:[+] chr6:111737637:111737676:[-] nonBSJ supported 5UTR

circRNA 5':CAGGAAAUCCGUGUCUUCCAGC--AAGUCCACGUCUUCCAACA 3'


            |||||| :||:| || ||| || |||||| ||


target  3':UUCCUUUC--UACGGUACAUCUACUUCU-GUACAGAAGACUGG 5'

 -20.60 1 RIC-seq
chrX:139865674:139865700:[+] chr6:111710372:111710394:[-] nonBSJ supported CDS

circRNA 5':UCUUCCAGAAAAAUCUGUGUCUUCCAC 3'


            ||||| :||||: |||


target  3': GAAGGGUAUACCGGACAUCU--GGU 5'

 -12.90 1 RIC-seq
chrX:139865674:139865704:[+] chr6:111710372:111710408:[-] nonBSJ supported CDS

circRNA 5':UCUUCCAGAAAAAUCUGU-GUCU------UCCACCAAA 3'


            ||||| :|||| | |: ||||||||


target  3': GAAGGGUAUACCGGACAUCUGGUCCCAAAGGUGGUUA 5'

 -22.00 1 RIC-seq