Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865967:139865992:[+] chr1:115267910:115267932:[-] nonBSJ supported CDS

circRNA 5':UCCAUGUCUUCCAGAAAAUCCAUGUC 3'


            |||||||::|||| |||| |:


target  3':UGGUACAGGGGGUCA---AGGUCCGA 5'

 -26.20 1 RIC-seq
chrX:139865967:139865997:[+] chr1:115266503:115266529:[-] nonBSJ supported CDS

circRNA 5':UCCAUGUCUUCCAGAAAAUCCAUGUC-UUCCA 3'


            || ||:|||| || || :|| ||||


target  3':GGG---AGGAGGUGUUAGAGU--UAGUAAGGA 5'

 -19.60 2 RIC-seq
chrX:139866616:139866642:[+] chr1:115279414:115279454:[-] nonBSJ supported CDS

circRNA 5':CUCCAGGUCUUCCAGC-----------------AUCUCCAGGGC 3'


            ||||| ||||||| |||| |||||


target  3': AGGUCA--AAGGUCGACUUGCAAGGGAAGCUGUAGAAGUCCCC 5'

 -26.50 2 RIC-seq
chrX:139866631:139866660:[+] chr1:115279410:115279434:[-] nonBSJ supported CDS

circRNA 5':CAUCUCCAGGGCUUCCAGCAUCUGCUCGUC 3'


            |||||||| ||||||| || |||


target  3':AUAGAGGUCA--AAGGUCG---ACUUGCAA 5'

 -25.80 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:115279410:115279434:[-] target - chr1:115279426-115279427 C>T PACA-CA ICGC
chr1:115279414:115279454:[-] target - chr1:115279426-115279427 C>T PACA-CA ICGC