Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865615:139865685:[+] chr8:22874777:22874830:[+] nonBSJ supported CDS

circRNA 5':CAUG-UCUUCCAAUAAUUUCAAGGUCUUCCAUCAAAUACAGAUCUUCCAGCUAAUCC-AUGUCUUCCAGAAAA 3'


            ||| |||||| :||| |||| |||: |||| ||:| || ||| |||| ||||


target  3':UUACUAGAAGGAG---GAAG-UCCAU--GGUG-----UGUCCAC-----CGGU--GGCUAC-GAAGAGCUUUA 5'

 -31.80 51 RIC-seq
chrX:139865662:139865685:[+] chr8:22874777:22874798:[+] nonBSJ supported CDS

circRNA 5':AGCUAAUCC-AUGUCUUCCAGAAAA 3'


            ||:| || ||| |||| ||||


target  3':CCGGU--GGCUAC-GAAGAGCUUUA 5'

 -14.20 1 RIC-seq
chrX:139865668:139865685:[+] chr8:22874777:22874794:[+] nonBSJ supported CDS

circRNA 5':UCC-AUGUCUUCCAGAAAA 3'


            || ||| |||| ||||


target  3':UGGCUAC-GAAGAGCUUUA 5'

 -10.70 1 RIC-seq