Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865820:139865860:[+] chr7:121766428:121766476:[-] nonBSJ supported CDS

circRNA 5':UCCAGGUCUU-CCAGUCAGUCAGUGUCU-----------UCCAGAAAAAUCUA 3'


            || |:| ||||:| || ||||: :|| ||||


target  3': GGA-CGGUGUGGUCGG---GUGACAGGUUUACGGUGAUGGGCAUGAGGAGAUA 5'

 -21.90 20 RIC-seq
chrX:139865820:139865860:[+] chr7:121766436:121766483:[-] nonBSJ supported CDS

circRNA 5':UCCAGGUCU---UCCAGUCAGUCAGUGUCU----UCCAGAAAAAUCUA 3'


            |||| :| ||||: |:|| |::|: ||| |||:|


target  3':UGGUCGGGUGACAGGUUUA-CGGUGAUGGGCAUGAGGAGAUACUAGGUG 5'

 -22.00 1 RIC-seq