Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866620:139866643:[+] chr17:49043475:49043484:[-] nonBSJ supported 3UTR

circRNA 5':AGGUCUUCCAGCAUCUCCAGGGCU 3'


            ||| ||::|


target  3':ACCA--------------UCUUGC 5'

 -4.60 1 RIC-seq
chrX:139865667:139865695:[+] chr17:49098613:49098640:[-] nonBSJ supported CDS

circRNA 5':AUCCAUGUCUUCCAGAAAAAUCUGUGUCU 3'


            || |||||| ||:||


target  3':AAGCAAAAGAAGGAAAUUCCCU-CAUAGU 5'

 -12.50 15 RIC-seq
chrX:139865673:139865695:[+] chr17:49098619:49098640:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAGAAAAAUCUGUGUCU 3'


            |||||| ||:||


target  3':AAGAAGGAAAUUCCCU-CAUAGU 5'

 -12.30 3 RIC-seq
chrX:139865685:139865731:[+] chr17:49098591:49098640:[-] nonBSJ supported CDS

circRNA 5':AAUCUGUGU-CUUCCACCAAAUCCAAG----UCUUCCAGUAAAUCUAGU-UCU 3'


            ||||||: |||| ||||||| |||||| ||| ||| ||


target  3':GUAGACAUUGGAAGU--GUUUAGGAAGCAAAAGAAGGAAAUUCCC-UCAUAGU 5'

 -27.00 17 RIC-seq
chrX:139865712:139865735:[+] chr17:49098600:49098626:[-] nonBSJ supported CDS

circRNA 5': CUUCCAGUAAAUCUAG----UUCUUCCA 3'


            |||| :|||||: |||||||


target  3':GGAAGU--GUUUAGGAAGCAAAAGAAGGA 5'

 -16.20 1 RIC-seq
chrX:139866357:139866386:[+] chr17:49064473:49064496:[-] nonBSJ supported CDS

circRNA 5':CCAGCAAAUCCACGUCUUCCAACAAAGCCA 3'


            |||| |: |||| |||||


target  3': GUCGGUAAAACUCG--AGGU----UCGGUG 5'

 -14.10 19 RIC-seq
chrX:139866358:139866386:[+] chr17:49064473:49064496:[-] nonBSJ supported CDS

circRNA 5':CAGCAAAUCCACGUCUUCCAACAAAGCCA 3'


           |||| |: |||| |||||


target  3':GUCGGUAAAACUCG--AGGU----UCGGUG 5'

 -13.80 1 RIC-seq
chrX:139866359:139866386:[+] chr17:49064473:49064496:[-] nonBSJ supported CDS

circRNA 5': AGCAAAUCCACGUCUUCCAACAAAGCCA 3'


            ||| |: |||| |||||


target  3':GUCGGUAAAACUCG--AGGU----UCGGUG 5'

 -11.90 19 RIC-seq
chrX:139866365:139866386:[+] chr17:49064471:49064496:[-] nonBSJ supported CDS

circRNA 5':UCCACGUC--------UUCCAACAAAGCCA 3'


            ||| |:| :|||| |||||


target  3':UGGU-CGGUAAAACUCGAGGU----UCGGUG 5'

 -13.50 1 RIC-seq
chrX:139866372:139866386:[+] chr17:49064485:49064496:[-] nonBSJ supported CDS

circRNA 5':CUUCCAACAAAGCCA 3'


            ||||| |||||


target  3':CGAGGU----UCGGUG 5'

 -10.50 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:49098591:49098640:[-] target - chr17:49098616-49098617 G>A BTCA-JP ICGC
chr17:49098600:49098626:[-] target - chr17:49098616-49098617 G>A BTCA-JP ICGC
chr17:49098613:49098640:[-] target - chr17:49098616-49098617 G>A BTCA-JP ICGC