Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865874:139865892:[+] chr17:9817469:9817486:[-] nonBSJ supported 3UTR

circRNA 5':AUCCAGGUCUUCCAGUCAA 3'


            ||| |||||| |||


target  3':CGGGACCAGAAUUA-AGUG 5'

 -12.30 1 RIC-seq
chrX:139865900:139865923:[+] chr17:9817449:9817480:[-] nonBSJ supported 3UTR

circRNA 5':CUUCCGGAAAAAA--------UCCAGGUCUUC 3'


            ||| ||| :|| ||||||


target  3':CAAGACCUGACAACUGAGAUCGGGACCAGAAU 5'

 -12.70 1 RIC-seq
chrX:139865900:139865928:[+] chr17:9817449:9817470:[-] nonBSJ supported 3UTR

circRNA 5':CUUCCGGAAAAAAUCCAGGUCUUCCAGCC 3'


            ||| ||| : ||| |||


target  3':CAAGACCUGACAAC---UGAGA---UCG 5'

 -6.60 2 RIC-seq
chrX:139865900:139865929:[+] chr17:9817449:9817471:[-] nonBSJ supported 3UTR

circRNA 5':CUUCCGGAAAAAAUCCAGGUCUUCCAGCCA 3'


            ||| ||| : ||| ||||


target  3':CAAGACCUGACAAC---UGAGA---UCGG 5'

 -10.80 6 RIC-seq
chrX:139865900:139865929:[+] chr17:9817449:9817472:[-] nonBSJ supported 3UTR

circRNA 5':CUUCCGGAAAAAAUCCAGGUCUUCCAGCCA 3'


            ||| ||| : ||| ||||


target  3':CAAGACCUGACAAC---UGAGA---UCGGG 5'

 -10.50 20 RIC-seq
chrX:139865900:139865954:[+] chr17:9817449:9817486:[-] nonBSJ supported 3UTR

circRNA 5':CUUCCGGAAAAAAUCCAGGUCUUCCAGCCAAUAUAUGUCUUCCUGAAGAUCCACG 3'


            ||| ||| : ||| |||| ||||| :|| |||


target  3':CAAGACCUGACAAC---UGAGA---UCGGGAC----CAGAA------UUAAGUG 5'

 -14.40 2 RIC-seq
chrX:139865900:139865954:[+] chr17:9817449:9817487:[-] nonBSJ supported 3UTR

circRNA 5':CUUCCGGAAAAAAUCCAGGUCUUCCAGCCAAUAUAUGUCUUCCUGAAGAUCCACG 3'


            ||| ||| : ||| |||| ||||| :|| |||


target  3':CAAGACCUGACAAC---UGAGA---UCGGGAC----CAGAA------UUAAGUGA 5'

 -14.10 24 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:9817449:9817470:[-] target - chr17:9817458-9817459 T>C PACA-CA ICGC
chr17:9817449:9817471:[-] target - chr17:9817458-9817459 T>C PACA-CA ICGC
chr17:9817449:9817472:[-] target - chr17:9817458-9817459 T>C PACA-CA ICGC
chr17:9817449:9817480:[-] target - chr17:9817458-9817459 T>C PACA-CA ICGC
chr17:9817449:9817486:[-] target - chr17:9817458-9817459 T>C PACA-CA ICGC
chr17:9817449:9817487:[-] target - chr17:9817458-9817459 T>C PACA-CA ICGC
chrX:139865900:139865923:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865900:139865928:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865900:139865929:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865900:139865954:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC