Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866296:139866307:[+] chr13:77754425:77754437:[-] nonBSJ supported 5UTR

circRNA 5': UUGUCUUCCCUC 3'


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target  3':GAACAGUAGGGAC 5'

 -14.20 1 RIC-seq
chrX:139866242:139866271:[+] chr13:77672684:77672720:[-] nonBSJ supported CDS

circRNA 5': ACGUCUUCCAACA------AAGCCAUGUCUUC-CAGA 3'


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target  3':UUGCA-AGGGCUCCUCCUAGUUCGAAACAGAAUUGUCC 5'

 -16.80 17 RIC-seq
chrX:139866279:139866306:[+] chr13:77672672:77672692:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCC--AGAAAAUCCUUGUCUUCCCU 3'


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target  3':UCAGACUAAAUCUUGC--------AAGGG 5'

 -9.10 1 RIC-seq
chrX:139866332:139866350:[+] chr13:77672671:77672691:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCA-GGAAA--UCCG 3'


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target  3':CUCAGACUAAAUCUUGCAAGG 5'

 -9.60 12 RIC-seq
chrX:139866332:139866352:[+] chr13:77672671:77672689:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCA-GGAAAUCCGUG 3'


            ||||| :||| |||


target  3':CUCAGACUAAAUCUU---GCAA 5'

 -7.40 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr13:77672684:77672720:[-] target - chr13:77672720-77672721 G>A EOPC-DE ICGC