Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865668:139865717:[+] chr7:11441490:11441536:[-] nonBSJ supported CDS

circRNA 5':UCCAUGUCUUCCAGAAAAAUCUGUGUCUUCCACCAAAUCCAAG-UCUUC-CA 3'


            || |||| |:||||:| ||||||||| || || ||:|| |


target  3':UGGC-CAGACCUAGAC--UGGACAUA--AGGUGGUUUCGGAUCUAGGAGUGG 5'

 -33.60 1 RIC-seq
chrX:139865780:139865814:[+] chr7:11676390:11676438:[-] nonBSJ supported CDS

circRNA 5':AUCC-AGGUCU-----UCCAGUCAAUCA-------GUGUCU-UC-CAGAA 3'


            ||| |||||: ||||||| || |||:| || ||:|


target  3':AAGGUUCCAGGGUCAGAGGUCAGCAUGUUGAGAAACACGGUUAGCGUUU 5'

 -29.70 1 RIC-seq
chrX:139865916:139865928:[+] chr7:11418698:11418711:[-] nonBSJ supported CDS

circRNA 5':AGGUCUUCCA-GCC 3'


            ||:|: ||


target  3':ACCGGGUUUACCGA 5'

 -8.10 2 RIC-seq
chrX:139866295:139866309:[+] chr7:11446662:11446677:[-] nonBSJ supported CDS

circRNA 5':CUUGUCUUCCC-UCAA 3'


            |:|||||| |||


target  3':AAGCAGAAGCCUAGUA 5'

 -10.60 2 RIC-seq
chrX:139866387:139866399:[+] chr7:11446628:11446640:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCAUCAA 3'


            |||||||||||


target  3':CCAGAAGGUAGUG 5'

 -18.00 1 RIC-seq
chrX:139866405:139866467:[+] chr7:11446628:11446684:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCAGCCUACUUGUGUCUUCCAACA-AAGGUACGUCUUCCAACAAAGGUACGUC-UUCCA 3'


            |||||||| |||| | || ||||||| || |:| ||||


target  3':CCAGAAGGUAGUG-GAACUUUCCCGACCCAGUGACAAGCAGAAG-------CCUAGUAAAAAGGA 5'

 -30.00 1 RIC-seq
chrX:139866482:139866512:[+] chr7:11486856:11486881:[-] nonBSJ supported CDS

circRNA 5':UCCAACAAAGGUACGUCUUCCAGAAAAUCCA 3'


            ||||||| :|| ||: ||| | |||


target  3': GGUUGUUCUCACGCGAAAGACC----AGGA 5'

 -17.00 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr7:11446628:11446684:[-] target - chr7:11446670-11446671 C>T PACA-CA ICGC
chr7:11446662:11446677:[-] target - chr7:11446670-11446671 C>T PACA-CA ICGC