5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139865666:139865713:[+] | chr3:50129482:50129528:[+] | nonBSJ supported | CDS |
circRNA 5':AAUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCCACCAAA-UCCAAGUCU 3' |||| ||||| || |:||:|||||||| || ||| target 3':GUAGGGACAGAUA--CUACCUUGGCAUAGAAGGUGAUGCGAGACA-AGAU 5' |
-32.20 | 1 | RIC-seq |
| chrX:139865687:139865713:[+] | chr3:50129482:50129509:[+] | nonBSJ supported | CDS |
circRNA 5':UCUGUGUCUUCCACCAAA-UCCAAGUCU 3' |:||:|||||||| || ||| target 3':UGGCAUAGAAGGUGAUGCGAGACA-AGAU 5' |
-21.40 | 1 | RIC-seq |
| chrX:139866248:139866290:[+] | chr3:50140352:50140391:[+] | nonBSJ supported | Intron |
circRNA 5':UCCAACAAAGCCAUGUC--UUCCAGACUAUCCAUGUCUUCCAGAA 3' ||| ||||: | :|| |:||||| :||:| |||| target 3':UGGUGG---CGGUGGAUAUGAGACG-GGUAGGU-UAGGAAGUCUA 5' |
-28.70 | 1 | RIC-seq |
| chrX:139866367:139866441:[+] | chr3:50140346:50140405:[+] | nonBSJ supported | Intron |
circRNA 5':CACGUCUU---CCAACAAA-GCCAUGUCUUCCAUCAAAUUAAUGUCUUCCAGCCUA-CUUGUGUCUUCCAACAAAGGUAC 3' ||| ||||| ||||: | ||: ||: |||:| |: :|||| |||:| target 3':AUGCCCCUCCUGGUUGGUGGCGGUGGA--------------UAU-GAGA--CGGGUAGGUUA-GGAAGUCUA--UCCGUC 5' |
-29.60 | 1 | RIC-seq |