Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chr9:88923390:88923455:[-]	chr11:65197427:65197468:[+]	nonBSJ supported	Exon	circRNA 5':CGUUUCUACACAGAGGAAUUUGAUUUUAAAGAACAUGUUAUUAGCA-UCAGGAGAAAA-AGUCUGCUU 3' \|: \| \|\| \|\|\| \|\| \|\| \|\|\|\|\|\|:\| \|\|:\|\|\|\|:: target 3':UCGUUGUUG-GUCCCCGG--------------------------GUAAGUCCUUUGUAGUCGGACGGGA 5'	-28.90	2	RIC-seq
chr9:88924153:88924184:[-]	chr11:65190647:65190681:[+]	nonBSJ supported	Exon	circRNA 5':ACCUGAAAUAUUUGUUGAUGGCU-----GGAAUAUUU 3' \|\|\|\|\| :\|\|\|\| : \|\|\|\| \|\| \|\|\|\|: target 3':AGGACUA-GUAAAGGUC--CCGACGACGCCGGAUAAGG 5'	-17.10	2	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr9:88923390:88923455:[-]	circRNA	-	chr9:88923400-88923401	T>G	LINC-JP	ICGC