Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chr3:125032335:125032361:[-] chr11:65210599:65210619:[+] nonBSJ supported Exon

circRNA 5':CUACAGGAUUCAGUACUUCAAGAUCGA 3'


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target  3':UGUGUCCUAUACCG------UCUAGCC 5'

 -17.30 1 RIC-seq
chr3:125032335:125032374:[-] chr11:65210599:65210651:[+] nonBSJ supported Exon

circRNA 5':UGUGUCUG-GAGA--GC----------------UACAGGAUUCAGUACUUCAAGAUCGA 3'


            ||| | | |||| || :||||||| |: ||||||


target  3':UCACUGCCACUCUUACGUUGAGUGAACAGUAAUGUGUCCUAUACCG------UCUAGCC 5'

 -23.20 1 RIC-seq
chr3:125032335:125032384:[-] chr11:65210599:65210656:[+] nonBSJ supported Exon

circRNA 5':GCCAGUCUACUGUGUCUG-GAGA--GC----------------UACAGGAUUCAGUACUUCAAGAUCGA 3'


            |||| ||| | | |||| || :||||||| |: ||||||


target  3': GGUCCU----CACUGCCACUCUUACGUUGAGUGAACAGUAAUGUGUCCUAUACCG------UCUAGCC 5'

 -25.60 15 RIC-seq
chr3:125032335:125032385:[-] chr11:65210599:65210637:[+] nonBSJ supported Exon

circRNA 5':GGCCAGUCUACUGUGUCUGGAGAGCUACAGGAUUCAGUACUUCAAGAUCGA 3'


            || | || ||| |||| :| ||||||| |: ||||||


target  3':ACGUUGAG-UGA-ACAGUAA---UG-UGUCCUAUACCG------UCUAGCC 5'

 -25.60 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr3:125032335:125032384:[-] circRNA - chr3:125032384-125032385 C>A LINC-JP ICGC
chr3:125032335:125032385:[-] circRNA - chr3:125032384-125032385 C>A LINC-JP ICGC