Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chr15:76584984:76585018:[-] chr11:65190358:65190400:[+] nonBSJ supported Exon

circRNA 5':AGCAGGCAUAGCAAAAGUUCUGG---------UGGCUCAG-CAUG 3'


            ||| :||| |::|: |::||||| |||


target  3':GCGUGGGGGUCGGG--CGGGGGAGCAGAGUAGAUUGAGUCAGUAG 5'

 -23.80 3 KARR-seq
chr15:76585000:76585015:[-] chr11:65205285:65205302:[+] nonBSJ supported Exon

circRNA 5': AGGCAUAGCAAAA-GUU 3'


            ||||| ||||||| ||


target  3':AUCCGUCUCGUUUUGCAU 5'

 -15.90 1 KARR-seq
chr15:76587934:76587982:[-] chr11:65191254:65191298:[+] nonBSJ supported Exon

circRNA 5':CGCCUUGGAGGUGAAGUGUCCUGCUUAGUAGCUGGAACCAAAUG---UGACA 3'


            || |:|||: |||| | :|:: ||||| :|||


target  3':UCGCC-CUUCCGGAGAGAAGGAGG------UGGUAAUGGUUGUUAUGGCUGA 5'

 -25.00 2 KARR-seq
chr15:76566772:76566791:[-] chr11:65192141:65192163:[+] nonBSJ supported Exon

circRNA 5':GACAUGCAAGUU--GGACAGAC 3'


            |||::|| :|| ||| |||


target  3':GUGUGUGUCUAAAUCCUUACUGG 5'

 -12.20 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr15:76566772:76566791:[-] circRNA 1069254 chr15:76566776-76566777 G>A Multiple_acyl-CoA_dehydrogenase_deficiency ClinVar
chr15:76566772:76566791:[-] circRNA 2594 chr15:76566772-76566773 G>A Multiple_acyl-CoA_dehydrogenase_deficiency|not_provided|ETFA-related_disorder|Glutaric_acidemia_IIa ClinVar
chr15:76584984:76585018:[-] circRNA 2431399 chr15:76584986-76584987 T>G Multiple_acyl-CoA_dehydrogenase_deficiency ClinVar
chr15:76584984:76585018:[-] circRNA 2675074 chr15:76585001-76585002 AC>A Multiple_acyl-CoA_dehydrogenase_deficiency ClinVar
chr15:76584984:76585018:[-] circRNA 2675077 chr15:76584990-76584991 G>A Multiple_acyl-CoA_dehydrogenase_deficiency ClinVar
chr15:76585000:76585015:[-] circRNA 2675074 chr15:76585001-76585002 AC>A Multiple_acyl-CoA_dehydrogenase_deficiency ClinVar
chr15:76587934:76587982:[-] circRNA 2844458 chr15:76587940-76587941 AT>A Multiple_acyl-CoA_dehydrogenase_deficiency ClinVar