5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA 3' interaction region | CircRNA 5' interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chr4:166184471:166184511:[+] | chr4:166141085:166141087:[+] | chr11:65208399:65208435:[+] | BSJ supported | Exon |
circRNA 5':UGC-AUGUACCGACCUUCUGAACAAGGCCAACACCUAUGCAGGAU 3' || |||| | |||:|: || ||||: ||::| target 3':CUGAUACAGAGACGGAGGGGA-----CGAUA--GGAUGGGUUUU 5' |
-21.60 | 2 | KARR-seq |
| chr4:166184447:166184485:[+] | - | chr11:65208404:65208441:[+] | BSJ supported | Exon |
circRNA 5':AAUCCGGGCU-----UUUGCUGAUAUGCAUGCAUGUACCGACCU 3' |:|| |:|| |:|||: : | ||| |:| || ||| target 3':CUGGGGCUGAUACAGAGACGGAG--GGG-ACG-AUA-GGAUGG 5' |
-25.00 | 1 | KARR-seq |
| chr4:166184450:166184511:[+] | chr4:166141085:166141087:[+] | chr11:65208399:65208439:[+] | BSJ supported | Exon |
circRNA 5': CCGGGCUUUUGCUGAUAUGCAUGCAUGUACCGACCUUCUGAACAAGGCCAACACCUAUGCAGGAU 3' || |:|| |||| | |||:|: || ||||: ||::| target 3':GGGGCUGA-----------------UACAGAGACGGAGGGGA-----CGAUA--GGAUGGGUUUU 5' |
-26.40 | 1 | KARR-seq |
| chr4:166184493:166184511:[+] | chr4:166141085:166141117:[+] | chr11:65208416:65208461:[+] | BSJ supported | Exon |
circRNA 5':AAGGCCAACACCUAUG-CAG--GAUGCACAAAGCAGGGUCAUCAGAAGCCUCUCG 3' |:||| |||| :||| | ||: | | :| ||| || |||||:| target 3': UUCGG-UGUGAGUACUGGUGACUGGG-GC--UGAUACAG-AGA---CGGAGGGG 5' |
-31.80 | 1 | KARR-seq |
| Interaction region | CircRNA/target | Mutation ID | Position | Variant | Associated trait | Resource |
| chr4:166141085:166141087:[+] | circRNA | - | chr4:166141086-166141087 | A>G | LAML-KR | ICGC |
| chr4:166141085:166141117:[+] | circRNA | - | chr4:166141086-166141087 | A>G | LAML-KR | ICGC |