Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865677:139865702:[+]	chrX:136658544:136658586:[+]	nonBSJ supported	Intron	circRNA 5': UCCAGAAAAAUCUGU----GUCU-----------UCCACCA 3' \|\|\|\|:\| \|\| \|:\|: :\|\|: \|\|\|\|\|\|\| target 3':UGGGUUUCUUGUGGCGUCCAUAGGUCCCCUUUGUCAGGUGGUU 5'	-19.60	1	KARR-seq
chrX:139865676:139865702:[+]	chrX:136658544:136658586:[+]	nonBSJ supported	Intron	circRNA 5':UUCCAGAAAAAUCUGU----GUCU-----------UCCACCA 3' \|\|\|\|:\| \|\| \|:\|: :\|\|: \|\|\|\|\|\|\| target 3':UGGGUUUCUUGUGGCGUCCAUAGGUCCCCUUUGUCAGGUGGUU 5'	-19.60	1	KARR-seq
chrX:139865679:139865702:[+]	chrX:136658544:136658581:[+]	nonBSJ supported	Intron	circRNA 5':CAGAAAAAUCU---GUGUCU-----------UCCACCA 3' \|\|\|\| \|:\| \|\|:\|\|: \|\|\|\|\|\|\| target 3':UUCUUG-UGGCGUCCAUAGGUCCCCUUUGUCAGGUGGUU 5'	-16.10	1	KARR-seq
chrX:139865648:139865702:[+]	chrX:136658544:136658619:[+]	nonBSJ supported	Intron	circRNA 5':AAUACAGAUCUUCCAGCUAAUCCAUGUCU-----UCCAGAAAAAUCUGU----GUCU-----------UCCACCA 3' \|\|\| \|:\|\|\| \|\|\|\| \|\|\|\|\|\|\| :\|\|\|:\| \|\| \|:\|: :\|\|: \|\|\|\|\|\|\| target 3':AUAUUUUUAGUUGGUCAAAAUGGUACAGUUUACUGGGUUUCUUGUGGCGUCCAUAGGUCCCCUUUGUCAGGUGGUU 5'	-39.50	2	KARR-seq