Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865568:139865611:[+] chrX:123227908:123227964:[+] nonBSJ supported CDS

circRNA 5': CCACCAA----AUCCA-GAUCUUCC------AGGAAAAUCC--ACGUCUUCCAGGAA 3'


            || || |||| :|||:||| |||| ||| ||:||||||| :|


target  3':AGGGAGUAAUUCUAGGAGUUAGGAGGGAAGACUCCUG-UAGUAUUGUAGAAGGUGUUA 5'

 -37.00 2 KARR-seq
chrX:139865580:139865625:[+] chrX:123227938:123227991:[+] nonBSJ supported CDS

circRNA 5':GAUCU---UCCA-GG----AAAAUCCACGUCUUCCAGGAAAUCCAU-GUCUUCCA 3'


            |||| |||| || |||||||| :|:|| :| |||| :||:|||


target  3': UAGAUAUAGGUACCACAGUUUUAGGUAAGGGAGUAAUUCUAGGAGUUAGGAGGG 5'

 -33.20 2 KARR-seq