Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865540:139865565:[+] chrX:118374318:118374337:[+] nonBSJ supported CDS

circRNA 5': AUCCAGUCUUCCAGCAAUUACUGGUC 3'


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target  3':AUAGGUC-------CGUUUUACACCGU 5'

 -13.70 2 KARR-seq
chrX:139865540:139865580:[+] chrX:118374281:118374337:[+] nonBSJ supported CDS

circRNA 5': AUCCAGUCUUCCA---GCAAUUA--CUGG-------UCUUCCACCAAA---UCCAG 3'


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target  3':AUAGGUCCGUUUUACACCGUUCCGGGGACCUACGUAGAGAAGGUCGUUUCUGGGGUA 5'

 -27.10 3 KARR-seq