Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866644:139866692:[+] chrX:80049128:80049188:[-] nonBSJ supported CDS

circRNA 5': UCC---AGCAUCUGCUCGUCUUCCAACAUCUCCAC--GUCU----UCCAG---CAUCUCUG 3'


            ||| |||| :|| |:| ||||||:|| |||| :|||| || |||||


target  3':UAGGGCAUCGUCUCUGA-CGGCUGGUUGUGGAUUAUUACAGACAUGGGGUCCUUGU-GAGACU 5'

 -37.10 2 KARR-seq
chrX:139866649:139866692:[+] chrX:80049126:80049188:[-] nonBSJ supported CDS

circRNA 5': CAUCU----------GCUCGUCUUCCAACAUCUCCAC--GUCU----UCCAG---CAUCUCUG 3'


            ||||: :|| |:| ||||||:|| |||| :|||| || |||||


target  3':CGUAGGGCAUCGUCUCUGA-CGGCUGGUUGUGGAUUAUUACAGACAUGGGGUCCUUGU-GAGACU 5'

 -33.00 2 KARR-seq