Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866269:139866294:[+] chrX:73042197:73042226:[-] nonBSJ supported Exon

circRNA 5':AGACUAU-CCAUGUCUUC--C-AGAAAAUC 3'


            ||||| |||||:|:: | ||||||:


target  3':CCUGAUUCGGUACGGGGAUUGUUCUUUUGU 5'

 -21.80 8 RIC-seq
chrX:139866332:139866346:[+] chrX:73066197:73066215:[-] nonBSJ supported Exon

circRNA 5':AGGU-CUUCCA---GGAAA 3'


            ||: ||:|| ||||


target  3':CCCGUGAGGGACGACCUUC 5'

 -11.90 4 RIC-seq
chrX:139865549:139865583:[+] chrX:73061962:73061995:[-] nonBSJ supported Exon

circRNA 5':UCCAGCAAUUA-CUGGUCUUCCACCAAAUCCAGAUC 3'


            |||| ||| | :|||: || |||||||||


target  3':UGGUCC--AAUAGCUCAGGUGGGAUGUUAGGUCUAC 5'

 -26.20 2 KARR-seq
chrX:139865816:139865881:[+] chrX:73054941:73055005:[-] nonBSJ supported Intron

circRNA 5':GAAAUCCAGGUCUUCCAGUCAG-UCAGU-GUCUUCCAGAAAAAUCUACGUCUUC-CACCAAAUC-CAGGU 3'


            |||:||| ||||||| ||: |||: ||||| |||| || || ||||


target  3':AUUUGGGUACAGAAGGGU-GUUAAGUUUCCAGAAAAUUGACACCC---CAGACACGUAUCUAAGAGUCC 5'

 -33.30 3 KARR-seq
chrX:139866621:139866664:[+] chrX:73068953:73068990:[-] nonBSJ supported Exon

circRNA 5':GGUCUUCCAGCAUCUCCAGGGCUUCCAGCAUCUGCUCGUCUUCC 3'


            |:||: ||| ||:|| || ||| ||||||


target  3':ACGGAGUUCCGUUUACGUUCC------CGCUGACCAUCAGAAGU 5'

 -25.20 4 KARR-seq
chrX:139865532:139865570:[+] chrX:73061962:73062002:[-] nonBSJ supported Exon

circRNA 5':UCCAGCAAAUCCAGUCUUCCA-GCAAUUACUG-GUCUUCCA 3'


            |||| ||| ||||: || :||||: ||||| |


target  3':UGGUCCAAUAGCUCAGGUGGGAUGUUAGGUCUACAGAAAGA 5'

 -26.90 2 KARR-seq
chrX:139866691:139866698:[+] chrX:73042064:73042071:[-] nonBSJ supported Exon

circRNA 5':UGUGUCUU 3'


            ||||||


target  3':UCACAGAU 5'

 -8.10 2 KARR-seq
chrX:139865861:139865894:[+] chrX:73046760:73046793:[-] nonBSJ supported Exon

circRNA 5':CGUCUUCCA-CCAAAUCCAGGUCUUCCAGUCAAUC 3'


            | |||||| |||| | ||||:|||| :||||


target  3':UCUGAAGGUAGGUUGA-GUCCGGAAGCCAGGUUAA 5'

 -30.90 2 KARR-seq
chrX:139865799:139865849:[+] chrX:73062717:73062775:[-] nonBSJ supported Exon

circRNA 5':UCAGU-GUCUUCCAGAAAGAAAUCCAGGUCUUC--------CAGUCAGUCAGU-GUCUUCC 3'


            ||:| |||| |:|||| |||:| ||| || | ||||


target  3':CGUUAUCAGACA-UUUUUCCCC-GGUUCCCGUGUGUUCCCCGUCUCUCUCCCUUCUGAAGC 5'

 -16.90 1 KARR-seq
chrX:139865650:139865702:[+] chrX:73070892:73070952:[-] nonBSJ supported Exon

circRNA 5':UACAGAUCUUC--CAG-CUAA-UCCAUGUCUUCCAGAAAAAU---CUGUG-UC--UUCCACCA 3'


            |||| || ||| |||| |||| ||||| ||| ||||| || |||||||


target  3':CUGUCACACAGUAGUCAGAUUAAGGU--AGAAGACGAGAUUAACCGACACUAGUUAAGGUGGG 5'

 -32.60 4 KARR-seq
chrX:139865368:139865393:[+] chrX:73046623:73046653:[-] nonBSJ supported Exon

circRNA 5': UUCCAACAACUCC---------GGGUCUUCCAGCG 3'


            ||||| ||| :|||||||||||


target  3':GAAGGU-----AGGAACCCAACAUCCAGAAGGUCGA 5'

 -28.00 1 KARR-seq
chrX:139865824:139865885:[+] chrX:73054923:73054974:[-] nonBSJ supported Intron

circRNA 5': GGUCUUCCAGUCAGUCAGUGU--CUUCCAGAAAAAUCUACGUCUUCCACCAAAUCC-AGGUCUUC 3'


            ||| ||| |||| ||| |||:|:| ||||||| ||| || |||||||


target  3':UCCAUU-GGU-------UCACUAUGAA------UUUGGGUACAGAAGGGUGUUAAGUUUCCAGAAA 5'

 -34.00 1 KARR-seq
chrX:139865776:139865817:[+] chrX:73062787:73062834:[-] nonBSJ supported Exon

circRNA 5':AGAAAUCCA-GGUCUUCCAGU---------CAAUCAGUGUCUUCCAGAAAGA 3'


            || ||| || || || || || |:|: :||||


target  3':ACUGU-GGUACC-GAUGGACACUAAAAUGUGUGAC-CGCGUUACG-UUUUCC 5'

 -12.60 1 KARR-seq
chrX:139866777:139866810:[+] chrX:73062142:73062172:[-] nonBSJ supported Exon

circRNA 5':UGUGCUGAUCUUCUGACAUUCA-GGUCUUCCAGUG 3'


            ||||::|:||||: ||| || ||:|


target  3':UCACGGUUGGAAGG----AAGGACCCCUCUGUUAA 5'

 -21.40 1 KARR-seq
chrX:139866786:139866816:[+] chrX:73046526:73046556:[-] nonBSJ supported Exon

circRNA 5':CUUCUGACAUUCA-GGUCUUCCAGUGUCU-GCA 3'


            ||||| ||| || |:||||| ||: ||


target  3':CAAGACCC--AGUACCCGGAGGUCUAAGGCCGG 5'

 -24.20 2 KARR-seq
chrX:139865953:139865980:[+] chrX:73040653:73040683:[-] nonBSJ supported Exon

circRNA 5': CGUCUUC-CAGAAAAUCCAU-GUCUUCCAG 3'


            |:|| || || || ||||||||


target  3':UGUAGUCAAGUGUUCAAGUUCUCAGAAGGUA 5'

 -16.70 1 KARR-seq
chrX:139866351:139866397:[+] chrX:73071063:73071105:[-] nonBSJ supported Exon

circRNA 5':UGUCUUCCAGCAAAUCCACGUCUUCCAACAAAGCCAUGUCUUCCAUC 3'


            |:|: ||| ||||||| || ||||||||| |||


target  3':UCGGGCGGUACUACAGGUGCACU--GU--UUUCGGUACUAUAUGUAU 5'

 -30.70 2 KARR-seq
chrX:139866785:139866826:[+] chrX:73046516:73046549:[-] nonBSJ supported Exon

circRNA 5': UCUUCUGACAUUCA-GGUCUUCCAGUGUCUGCAAUAUCCAGGU 3'


            |||||: ||| |||| :|| || |||||:|


target  3':AGGAAGGACCCAAGACCCAG-----UACC--CGG---AGGUCUA 5'

 -19.30 2 KARR-seq
chrX:139866561:139866604:[+] chrX:73053986:73054030:[-] nonBSJ supported Intron

circRNA 5':AAUAUAUGUCUUC-CAACUAAGCUACGUCUUCCAACAAAUCCAUG 3'


            |||:|||| || || |||| ||||| |||||


target  3':GUAUGUACAAAUACGUAAAUGAGAUGACGAAGGAUUUUGAGGUAA 5'

 -24.20 2 KARR-seq
chrX:139866777:139866815:[+] chrX:73062075:73062119:[-] nonBSJ supported Exon

circRNA 5': UGUGCUGAUCUUCUGACAUUCAGG----UCUU--CCAGU--GUCUGC 3'


            |:|:| |||| ||:| |||| |||| :|||||


target  3':UAUAUGUUUCCC---CUGUU-GUUCUCUAAGAAUUGGUCCGUUAGACGA 5'

 -21.20 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866777:139866815:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866785:139866826:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866561:139866604:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866777:139866810:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866777:139866815:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866785:139866826:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866786:139866816:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:73070892:73070952:[-] target - chrX:73070898-73070899 G>T LICA-CN ICGC