Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865856:139865907:[+] chrX:40552691:40552766:[-] nonBSJ supported Intron

circRNA 5':AUCUACGUCUUCCACCAAAUCCAGG---------------UCUUCCA-GUCAAUCCACA------------UCUUCCGGA 3'


            ||| |:||:|||||| |||| | ||:||| |:| ||||| :||:|| :


target  3': AGAAACGGAGGGUGGU--AGGUGCAUUCGACACUGAACGAGGAGGAACGGA-AGGUGACACUAAGACUCCGGAGGGGUC 5'

 -43.70 1 KARR-seq
chrX:139865861:139865905:[+] chrX:40552695:40552764:[-] nonBSJ supported Intron

circRNA 5':CGUCUUCCACCAAAUCCAGG---------------UCUUCCA-GUCAAUCCACA------------UCUUCCG 3'


            |:||:|||||| |||| | ||:||| |:| ||||| :||:||


target  3':ACGGAGGGUGGU--AGGUGCAUUCGACACUGAACGAGGAGGAACGGA-AGGUGACACUAAGACUCCGGAGGGG 5'

 -43.00 1 KARR-seq
chrX:139865856:139865905:[+] chrX:40552690:40552764:[-] nonBSJ supported Intron

circRNA 5':AUCUACGUCUUCCACCAAAUCCAGG---------------UCUUCCA-GUCAAUCCACA------------UCUUCCG 3'


            ||| |:||:|||||| |||| | ||:||| |:| ||||| :||:||


target  3':GAGAAACGGAGGGUGGU--AGGUGCAUUCGACACUGAACGAGGAGGAACGGA-AGGUGACACUAAGACUCCGGAGGGG 5'

 -43.90 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865856:139865905:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865856:139865907:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865861:139865905:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC