Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865351:139865394:[+] chr9:134393860:134393904:[+] nonBSJ supported CDS

circRNA 5':GCACCUGUGUCAAGGUCUUCCAACAACUCCG-GGUCUUCCAG-CGA 3'


            ||| ||:: |||:|: || |||||||||| ||


target  3':AGUGCACGU-GUUUCGCCUGGAGACUCUCCUACCAGAAGGUCUGCA 5'

 -33.50 3 KARR-seq
chrX:139865351:139865407:[+] chr9:134393844:134393904:[+] nonBSJ supported CDS

circRNA 5':GCACCUGUGUCAAGGUCUUCCAACAACUCCG-GGUCUUCCAG-CGACU---UCAAGUCUUCC 3'


            ||| ||:: |||:|: || |||||||||| || || ||| :||:||


target  3':AGUGCACGU-GUUUCGCCUGGAGACUCUCCUACCAGAAGGUCUGCAGACACAGUCUAGGAGA 5'

 -42.00 3 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr9:134393844:134393904:[+] target 1809727 chr9:134393853-134393854 GAC>G Muscular_dystrophy-dystroglycanopathy_(congenital_with_brain_and_eye_anomalies),_type_A1|not_provided ClinVar
chr9:134393844:134393904:[+] target 3757099 chr9:134393880-134393881 TCA>T Walker-Warburg_congenital_muscular_dystrophy|Muscular_dystrophy-dystroglycanopathy_(congenital_with_intellectual_disability),_type_B1|Autosomal_recessive_limb-girdle_muscular_dystrophy_type_2K ClinVar
chr9:134393844:134393904:[+] target 538722 chr9:134393889-134393890 C>T Walker-Warburg_congenital_muscular_dystrophy|Muscular_dystrophy-dystroglycanopathy_(congenital_with_intellectual_disability),_type_B1|Autosomal_recessive_limb-girdle_muscular_dystrophy_type_2K|POMT1-related_disorder|Muscular_dystrophy-dystroglycanopathy_(congenital_with_brain_and_eye_anomalies),_type_A1|not_provided ClinVar
chr9:134393860:134393904:[+] target 3757099 chr9:134393880-134393881 TCA>T Walker-Warburg_congenital_muscular_dystrophy|Muscular_dystrophy-dystroglycanopathy_(congenital_with_intellectual_disability),_type_B1|Autosomal_recessive_limb-girdle_muscular_dystrophy_type_2K ClinVar
chr9:134393860:134393904:[+] target 538722 chr9:134393889-134393890 C>T Walker-Warburg_congenital_muscular_dystrophy|Muscular_dystrophy-dystroglycanopathy_(congenital_with_intellectual_disability),_type_B1|Autosomal_recessive_limb-girdle_muscular_dystrophy_type_2K|POMT1-related_disorder|Muscular_dystrophy-dystroglycanopathy_(congenital_with_brain_and_eye_anomalies),_type_A1|not_provided ClinVar