Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865869:139865921:[+] chr9:128064487:128064530:[+] nonBSJ supported CDS

circRNA 5':ACCAAAUCCAGGUCUUCCAGUCAAUCCACAUCUUCCGGAAAAAAUCCAG-GUCU 3'


            || |||| ||: ||||||| | |:|


target  3': GGACUUCCUCCA-----UCGAAA----GUAGAAGAACGUACUACGUUAACGGU 5'

 -11.50 1 KARR-seq
chrX:139865877:139865921:[+] chr9:128064487:128064523:[+] nonBSJ supported CDS

circRNA 5':CAGGUCUUCCAGUCAAUCCACAUCUUCCGGAAAAAAUCCAG-GUCU 3'


            |||| ||: ||||||| | |:|


target  3':CUCCA-----UCGAAA----GUAGAAGAACGUACUACGUUAACGGU 5'

 -11.20 1 KARR-seq
chrX:139865876:139865922:[+] chr9:128064506:128064555:[+] nonBSJ supported CDS

circRNA 5':CCAGGUCUUCCAGUCA---AUC-CAC-AUCUUCCGGAAAAAAUCCAGGUCUU 3'


            ||::| ||:||| ||| || |:|| ||| :||||


target  3':AGUUUAA---GUUAGUUCAUAGCGUUUUGGACUUCCUCCAUCGAAAGUAGAAG 5'

 -14.30 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr9:128064487:128064523:[+] target - chr9:128064509-128064510 G>C PACA-CA ICGC
chr9:128064487:128064530:[+] target - chr9:128064509-128064510 G>C PACA-CA ICGC
chr9:128064506:128064555:[+] target - chr9:128064509-128064510 G>C PACA-CA ICGC
chrX:139865869:139865921:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865876:139865922:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865877:139865921:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC