Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865440:139865468:[+] chr9:126530920:126530949:[-] nonBSJ supported Intron

circRNA 5':CUUCCAGAAAAUCCACAUCUUCC-AGACAA 3'


            ||||| || ||||||


target  3':AAAGGUAAUUCUCUUUU-GACUUCUCUGUUG 5'

 -9.40 1 KARR-seq
chrX:139865406:139865452:[+] chr9:126530945:126530983:[-] nonBSJ supported Intron

circRNA 5':CCAAUAAUCUCAAGGUCUUCCAGAUAAUCCUGAGCUUCCAGAAAAUC 3'


            |||:|||| || ||:|||| |||: |:||||:


target  3':UGUUGUUAGUUUACCC----GUUUAUUU--ACUUACA--UUUUUUGA 5'

 -13.90 1 KARR-seq
chrX:139866727:139866742:[+] chr9:126488660:126488676:[-] nonBSJ supported Intron

circRNA 5':CCCAG--UCUUCCAUCAA 3'


            |||| |||||||:||


target  3':AGGUCUAAGAAGGUGGU 5'

 -20.10 1 KARR-seq
chrX:139866727:139866756:[+] chr9:126488660:126488696:[-] nonBSJ supported Intron

circRNA 5':CCCAG--UCUUCCAUCAA--------CUGGCUCAAUAUCC 3'


            |||| |||||||:|| ||| ||| |||


target  3':AGGUCUAAGAAGGUGGUGUGAGGUACGACGGAG----AGGG 5'

 -26.20 1 KARR-seq