Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865436:139865483:[+] chr9:125606989:125607031:[-] nonBSJ supported 3UTR

circRNA 5':UGAGCUUCCAGAAAAUCCACAUCUUCCAGACAAUCCAUGUCUUC-CGGA 3'


            ||:| ||||| ||| |||| | || |:|| || |::


target  3':UUUUGUGUGUCUUAA--GUG-AGAAA--CGAUAAGUGAUAGUAGUGUU 5'

 -14.40 1 KARR-seq
chrX:139865436:139865482:[+] chr9:125606989:125607030:[-] nonBSJ supported 3UTR

circRNA 5':UGAGCUUCCAGAAAAUCCACAUCUUCCAGACAAUCCAUGUCUUC-CGG 3'


            ||:| ||||| ||| |||| | || |:|| || |:


target  3':UUUUGUGUGUCUUAA--GUG-AGAAA--CGAUAAGUGAUAGUAGUGU 5'

 -13.90 1 KARR-seq