Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865898:139865926:[+] chr9:100767412:100767431:[+] nonBSJ supported CDS

circRNA 5':AUCUUCCGGAAAAAAUCCAGGUCUUCCAG 3'


            ||:||| ||| || ||||


target  3':CAGGAGG--------AGGAGAAGUAGGU 5'

 -15.10 11 KARR-seq
chrX:139866339:139866369:[+] chr9:100767352:100767388:[+] nonBSJ supported CDS

circRNA 5':CCAGGAAA-UCCGUGUCUUC-C------AGCAAAUCCAC 3'


            |||| ||| |||:|| | ||| |||||


target  3':AGUCCACGAAGGACCAGGAGAGCCAGUAUCGG-UAGGU 5'

 -23.10 1 KARR-seq
chrX:139866094:139866133:[+] chr9:100767393:100767436:[+] nonBSJ supported CDS

circRNA 5':GCCA-UGUCUUCCAGAAA---AUCCACAUCUUCCAA--UGGCCUCC 3'


            || :|||:||| |||||||:| |||| :||| ||


target  3': GGAAGCAGGAGGAGGAGAAGUAGGUGUGGUAGGUGGAGCCGUAG 5'

 -36.00 1 KARR-seq
chrX:139865887:139865931:[+] chr9:100767350:100767391:[+] nonBSJ supported CDS

circRNA 5': AGUCAAUCCACAUCUUCC-GGAAAAAAUCCAGGUCUU--CCAGCCAAU 3'


            ||||| ||||| || || |||| ||| ||||


target  3':CUCAGUCCAC----GAAGGACCAGG---AGAGCCAGUAUCGGUAGGUUC 5'

 -23.50 1 KARR-seq
chrX:139865888:139865929:[+] chr9:100767370:100767419:[+] nonBSJ supported CDS

circRNA 5':GUCAAUCCACAUCUUCCGGAAAAA-AUC-----CAGGU-CUUCCAG--CCA 3'


            || |||||||:| |||: ||| ||||| ||||| ||


target  3':AAG-UAGGUGUGGUAGGUGGAGCCGUAGACUCAGUCCACGAAGGACCAGGA 5'

 -35.40 1 KARR-seq
chrX:139866330:139866369:[+] chr9:100767352:100767387:[+] nonBSJ supported CDS

circRNA 5':CCAGGU-CUUCCAGGAAAUC-CGUGUCUUCCAGCAAAUCCAC 3'


            ||||| ||||| || || || ||| ||| |||||


target  3': GUCCACGAAGGACCAGGAGAGC-CAGUA--UCGG-UAGGU 5'

 -31.50 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr9:100767350:100767391:[+] target - chr9:100767364-100767365 A>T LINC-JP ICGC
chr9:100767352:100767387:[+] target - chr9:100767364-100767365 A>T LINC-JP ICGC
chr9:100767352:100767388:[+] target - chr9:100767364-100767365 A>T LINC-JP ICGC
chrX:139865887:139865931:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865888:139865929:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865898:139865926:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC