Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865518:139865533:[+] chr9:95040983:95041002:[-] nonBSJ supported Intron

circRNA 5':AGUAAAUC---AAG-UCUUC 3'


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target  3':CCAUUUACACAUUCAAGAAA 5'

 -5.10 1 KARR-seq
chrX:139865542:139865583:[+] chr9:95040916:95040952:[-] nonBSJ supported Intron

circRNA 5':CCAGUC-UUC-CAGCAAUUACUGGUCUUCCACCAAAUCCAGAUC 3'


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target  3':AGUCUGUAAGAGUAAACCCA---CAGAUACC----UAGGCCUAU 5'

 -12.20 1 KARR-seq