Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865395:139865437:[+] chr9:88626929:88626971:[+] nonBSJ supported Intron

circRNA 5':CUUCAAGUCUUCCAAUAAUCUCAAGGUCUUCCAGAUAAUCCUG 3'


            ||| |||||| || :||| || |||


target  3':UAAGACCAGAAGAUAACAAAAAAGAAAG-GGGUAUGGUACGACG 5'

 -15.10 1 KARR-seq
chrX:139865400:139865409:[+] chr9:88626921:88626931:[+] nonBSJ supported Intron

circRNA 5':AGUC-UUCCAA 3'


            |:| |||||


target  3':ACGGAAAGGUA 5'

 -8.70 3 KARR-seq
chrX:139865395:139865428:[+] chr9:88626921:88626971:[+] nonBSJ supported Intron

circRNA 5':CUUCAAGUCU----------------UCCAAUAAUCUCAAGGUC-UUCCAG 3'


            ||| |||| ||| |:| |:| |||||


target  3':UAAGACCAGAAGAUAACAAAAAAGAAAGGGGUAUGGUACGACGGAAAGGUA 5'

 -15.30 2 KARR-seq