Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865732:139865753:[+] chr9:79871577:79871594:[+] nonBSJ supported Intron

circRNA 5':UCCAGAAAAAUCUAGAUCUUCC 3'


            |||:| ||| ||| |||


target  3':CGGUUUG--UAG-UCUC-AAGU 5'

 -6.70 1 KARR-seq
chrX:139866763:139866807:[+] chr9:79895124:79895156:[+] nonBSJ supported CDS

circRNA 5':UCCA--ACGUC-UCCAGUGUGCUGAUCUUCUGACAUUCAGGUCUUCCA 3'


            || ||:| |||||:|| ||||||||||


target  3':UGGAAAUGUAUAAGGUCGCAAUU--------------GUCCAGAAGG 5'

 -31.30 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866763:139866807:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC