Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866692:139866718:[+] chr8:124383148:124383185:[-] nonBSJ supported 5UTR

circRNA 5':GUGUCUUC--------CAGCA---UCUUCAUGUCUUCC 3'


            ||:|||| ||| ||||||| |||


target  3':GACGGAAGAACUAAUAGUCAACAAAGAAGUAGUCAAGA 5'

 -15.50 1 KARR-seq
chrX:139866671:139866709:[+] chr8:124383143:124383187:[-] nonBSJ supported 5UTR

circRNA 5':UCCAC---GUCUUCCAGC--AUCUC-UGUGUCUUC--CAGCAUCUUC 3'


            |||| |:|||| | ||| ||| ||||| ||| ||||


target  3': GGUGUGACGGAAGAACUAAUAGUCAACAAAGAAGUAGUCA-AGAAA 5'

 -20.40 1 KARR-seq