Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866727:139866771:[+] chr7:151397551:151397599:[-] nonBSJ supported Intron

circRNA 5':CCCAGUC-UUCCAUCAACUGGCUCAAUAUCCAUGUCUUCC-----AACGUC 3'


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target  3':CGGUCCCCAAGGCUUAAAACCGUUCU-UAGUC-CUGGGGGAAAAAUUGCGU 5'

 -22.70 1 KARR-seq
chrX:139866727:139866748:[+] chr7:151397551:151397573:[-] nonBSJ supported Intron

circRNA 5':CCCAGUC-UUCCAUCAACUGGCU 3'


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target  3':CGGUCCCCAAGGCUUAAAACCGU 5'

 -14.00 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr7:151397551:151397599:[-] target - chr7:151397584-151397585 C>- PACA-CA ICGC