Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865525:139865543:[+] chr7:127389568:127389585:[+] nonBSJ supported Intron

circRNA 5':CAAGUCU-UCCAGCAAAUCC 3'


            |||:|| |||| || ||


target  3': UUCGGAGAGGU-GUGGAGU 5'

 -12.40 2 KARR-seq
chrX:139865510:139865544:[+] chr7:127389546:127389585:[+] nonBSJ supported Intron

circRNA 5': AGUCU-UCCAGUAAAUCA-----AGU-CUUCCAGCAAAUCCA 3'


            ||:|| |||| :| ||| |:| |: |||:|| ||


target  3':UUCGGAGAGGU-GUGGAGUAAUAAUUAUGGUGGUUGUC--GGA 5'

 -20.10 1 KARR-seq
chrX:139866647:139866701:[+] chr7:127572409:127572467:[+] nonBSJ supported Intron

circRNA 5':AGCAUCUGCUCGUCUUC-CAACAUCUC--CACGUCUUC-CAGCAUCUCUGUGUCUUCCA 3'


            ||| || ||:||| ||| ||| || | ||| ||| || |||


target  3':ACGUUGAGAAGUAGACAAGUUUAAGAAAAGUACUCUAAAGUCAUUGAGUCAAAAUAGGG 5'

 -23.80 1 KARR-seq
chrX:139865510:139865538:[+] chr7:127389549:127389585:[+] nonBSJ supported Intron

circRNA 5': AGUCU-UCCAGUAAAUCA-----AGU-CUUCCAGCA 3'


            ||:|| |||| :| ||| |:| |: |||:||


target  3':UUCGGAGAGGU-GUGGAGUAAUAAUUAUGGUGGUUGUC 5'

 -17.90 1 KARR-seq