Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865726:139865774:[+] chr6:121768270:121768330:[+] nonBSJ supported CDS

circRNA 5':AGUUCUUCCAGAAAAA---UCUAGA--UCUUCCAGUCA-AUCA----------GUGUCUUCCAGA 3'


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target  3': CAAGAAGGAGAAAGAACAAGUCAAAGAGAAGGAAAGCGUAGUGUAUCUUGUGUACUC--GGUC 5'

 -23.70 1 KARR-seq
chrX:139865726:139865758:[+] chr6:121768294:121768330:[+] nonBSJ supported CDS

circRNA 5':AGUUCUUCCAGAAAAA---UCUAGA--UCUUCCAGUCA 3'


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target  3': CAAGAAGGAGAAAGAACAAGUCAAAGAGAAGGAAAGC 5'

 -17.90 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr6:121768270:121768330:[+] target 16988 chr6:121768279-121768280 G>A Oculodentodigital_dysplasia,_autosomal_recessive|Oculodentodigital_dysplasia ClinVar
chr6:121768270:121768330:[+] target 3348598 chr6:121768286-121768287 A>G GJA1-related_disorder ClinVar
chr6:121768270:121768330:[+] target 537755 chr6:121768299-121768300 G>C Oculodentodigital_dysplasia,_autosomal_recessive ClinVar
chr6:121768294:121768330:[+] target 537755 chr6:121768299-121768300 G>C Oculodentodigital_dysplasia,_autosomal_recessive ClinVar