Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866460:139866513:[+] chr6:117915635:117915682:[-] nonBSJ supported Intron

circRNA 5':GUCUUCCAACAAAGGUAUGUCUUCCAACAAAGGUACGUCUUCCAGAAAAUCCAC 3'


            |||:|||||||| ||:||||| |: :|||| |||| |||


target  3':AAGAGGGUUGUUUA-----AGGAGGUUAUAUUAG-GUUUGAGGUAUUUUCGGUA 5'

 -31.50 1 KARR-seq
chrX:139866478:139866522:[+] chr6:117915635:117915673:[-] nonBSJ supported Intron

circRNA 5':GUCUUCCAACAAAGGUACGUCUUCCAGAA-AAUCCACGUCUUCCAA 3'


            |||:|||||||| ||:||||: |||||| :||||


target  3':AAGAGGGUUGUUUA-----AGGAGGUUAUAUUAGGUUU--GAGGUA 5'

 -32.80 1 KARR-seq