Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866057:139866066:[+] chr6:111438863:111438874:[+] nonBSJ supported Intron

circRNA 5':AUUUGG--GUCU 3'


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target  3':AAAACCAUCAGU 5'

 -6.40 2 KARR-seq
chrX:139866061:139866066:[+] chr6:111438863:111438868:[+] nonBSJ supported Intron

circRNA 5':GGGUCU 3'


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target  3':AUCAGU 5'

 -4.40 4 KARR-seq
chrX:139866090:139866117:[+] chr6:111547206:111547229:[+] nonBSJ supported 3UTR

circRNA 5':AAAAGCCAUGUCUUCCAGAAAAUCCACA 3'


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target  3':CUUUCGGUA-AGU-GGUCC--UAUGUGC 5'

 -18.10 1 KARR-seq